BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0286.p
         (116 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311075|ref|YP_003775167.1| methyltransferase [Herbaspirill...   115   1e-27
gi|300312539|ref|YP_003776631.1| methyltransferase [Herbaspirill...    80   6e-17

>gi|300311075|ref|YP_003775167.1| methyltransferase [Herbaspirillum
           seropedicae SmR1]
          Length = 448

 Score =  115 bits (288), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 62/108 (57%), Positives = 72/108 (66%)

Query: 1   MAAESQAFDLVLAADTLIYFGDLEKVFDAVASTLRSAGHFVFTVEAVMPEAGQVVGFQLH 60
           +A   Q+ DLV AADT+IYFGDL  V  AVA  LRS GHFVFTVEA+        G  LH
Sbjct: 340 LATHPQSCDLVTAADTMIYFGDLAPVMQAVALALRSGGHFVFTVEALTGADVAPQGHALH 399

Query: 61  PSGRYRHGTDYVMRCLAAAGLTLVSMTEATLREEIRQPVKGVLAVAQR 108
            SGRYRHG DYV   L A G TL+  ++  LREE+RQPV G+L VA+R
Sbjct: 400 ASGRYRHGRDYVRGLLQAHGFTLLHDSDQILREEVRQPVAGMLFVARR 447


>gi|300312539|ref|YP_003776631.1| methyltransferase [Herbaspirillum
           seropedicae SmR1]
          Length = 439

 Score = 79.7 bits (195), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 44/108 (40%), Positives = 62/108 (57%), Gaps = 2/108 (1%)

Query: 1   MAAESQAFDLVLAADTLIYFGDLEKVFDAVASTLRSAGHFVFTVEAVMPEAGQVVGFQLH 60
           M A    + L+ A D LIY G L   F A    L+  GH VFTVE  +  A +   + LH
Sbjct: 334 MTAHPSRYALIAACDVLIYCGQLASFFTAAQLALQEGGHLVFTVE--LAGAERPDSYYLH 391

Query: 61  PSGRYRHGTDYVMRCLAAAGLTLVSMTEATLREEIRQPVKGVLAVAQR 108
            SGR+RH   Y+  CL AAG+ +V + E +LR E++Q V G++ +A+R
Sbjct: 392 ASGRFRHQRAYIEDCLHAAGMQVVMLREESLRVEMQQAVPGLVVLARR 439


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.134    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 340,976
Number of extensions: 12356
Number of successful extensions: 69
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 2
Length of query: 116
Length of database: 1,619,870
Length adjustment: 73
Effective length of query: 43
Effective length of database: 1,274,215
Effective search space: 54791245
Effective search space used: 54791245
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 124 (52.4 bits)