BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0284.p
         (268 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311075|ref|YP_003775167.1| methyltransferase [Herbaspirill...   268   2e-73
gi|300312539|ref|YP_003776631.1| methyltransferase [Herbaspirill...   178   4e-46

>gi|300311075|ref|YP_003775167.1| methyltransferase [Herbaspirillum
           seropedicae SmR1]
          Length = 448

 Score =  268 bits (686), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 127/208 (61%), Positives = 161/208 (77%)

Query: 34  LARAERIYREVLAQDPVHPIALHYLGIFLHQNGQHDEGVQSIRLSCALQPDNAAWHNDLG 93
           L +A  IY  VL  DP+HP+ALHY GI+LHQ+GQHDE +  + L+ AL+PDNA WHND G
Sbjct: 34  LDQACAIYEAVLEADPIHPLALHYYGIWLHQDGQHDEALDKLELASALEPDNADWHNDRG 93

Query: 94  NVLFALREFGEASEAYQASLDADPHDHVVWNNLGSSQLQHNDSEGAIASFKQAVALSPEF 153
           NVLFAL++   A +AY  +L   P DH +WNNLG+  LQ +    AI++F++A+ + P+F
Sbjct: 94  NVLFALQQPALAEQAYADALALRPDDHTIWNNLGAVLLQQDKRPDAISAFERALQIDPDF 153

Query: 154 GPALIHLGNIYDAAGDKMTSSHYQCRAFVLPPLEGKSKEMLGISFYFLGRLQEAADIYRD 213
            P+L+HLG I++AAGDKM +SHYQCRA+VLPPLEGKS EMLGISFYFLGRL EAA+ YR 
Sbjct: 154 LPSLLHLGGIHEAAGDKMQASHYQCRAYVLPPLEGKSWEMLGISFYFLGRLPEAAEAYRA 213

Query: 214 WMEDEPDNPIAAHMYAACSQIEVPGRTA 241
           W+ +EPDNPIAAHM AACSQ +VP R +
Sbjct: 214 WLREEPDNPIAAHMLAACSQADVPPRAS 241


>gi|300312539|ref|YP_003776631.1| methyltransferase [Herbaspirillum
           seropedicae SmR1]
          Length = 439

 Score =  178 bits (451), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 98/197 (49%), Positives = 130/197 (65%)

Query: 34  LARAERIYREVLAQDPVHPIALHYLGIFLHQNGQHDEGVQSIRLSCALQPDNAAWHNDLG 93
           L  AE  YR  LA +  H    HYLG+ LHQ G+H+EGV  +R +    P +A W ND+G
Sbjct: 29  LEEAEEDYRVTLAMEEHHAPTQHYLGMLLHQRGRHEEGVTLMRQAALAAPADADWCNDIG 88

Query: 94  NVLFALREFGEASEAYQASLDADPHDHVVWNNLGSSQLQHNDSEGAIASFKQAVALSPEF 153
           NVLFA   F EA++AYQ +L   P D  +W NLG+++      + AIA+ +QA+A +P  
Sbjct: 89  NVLFACSRFDEAAQAYQQALALRPDDAQLWTNLGATRRAQGQHQAAIAACEQALATAPHS 148

Query: 154 GPALIHLGNIYDAAGDKMTSSHYQCRAFVLPPLEGKSKEMLGISFYFLGRLQEAADIYRD 213
             AL  L  I+   GD+M SS YQC AFVLPP EGKS+E+L ISFYFLGR+ EAA++ R 
Sbjct: 149 LAALHQLAEIHAHLGDRMQSSRYQCMAFVLPPHEGKSRELLAISFYFLGRVAEAAEVCRR 208

Query: 214 WMEDEPDNPIAAHMYAA 230
           W+++EP +PIA HM+AA
Sbjct: 209 WLQEEPGHPIANHMHAA 225


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.134    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 865,850
Number of extensions: 35065
Number of successful extensions: 128
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 118
Number of HSP's successfully gapped: 3
Length of query: 268
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 184
Effective length of database: 1,222,130
Effective search space: 224871920
Effective search space used: 224871920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)