BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0283.p (500 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311074|ref|YP_003775166.1| transcription regulator protein... 760 0.0 gi|300311016|ref|YP_003775108.1| MocR family transcription regul... 334 1e-92 gi|300311139|ref|YP_003775231.1| MocR family transcription regul... 143 3e-35 gi|300313928|ref|YP_003778020.1| GntR family transcription regul... 131 1e-31 gi|300310416|ref|YP_003774508.1| MocR family transcription regul... 119 8e-28 >gi|300311074|ref|YP_003775166.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 516 Score = 760 bits (1962), Expect = 0.0, Method: Compositional matrix adjust. Identities = 362/485 (74%), Positives = 417/485 (85%), Gaps = 2/485 (0%) Query: 16 ALTPVAPPA--LPIYRRLAEHYLSAIQSGTLAPGDRMPSVRDLMRQHHVSLSTALQTLRH 73 +L P AP + P+YRRLA+HY SAIQ+GTL GDRMPSVRDLMRQH VSLSTALQTLRH Sbjct: 29 SLLPSAPESGRQPLYRRLADHYQSAIQAGTLVAGDRMPSVRDLMRQHQVSLSTALQTLRH 88 Query: 74 LEEGGWLEARPRSGYFVRQPRRATIRPVGEPNILAPLDPAQYVGIHEQVSDFIARRQLQA 133 +EEGGWLEARPRSGYFVRQPRR+ IRPV EP L +D Q+VGIHE+VS +IA RQ A Sbjct: 89 MEEGGWLEARPRSGYFVRQPRRSAIRPVQEPKSLLAIDAGQFVGIHERVSKYIALRQAGA 148 Query: 134 PTIDLSGMTCAPELYAVEALKNAAIRALREQPSLLTSAMPINGNATFRQVVARRALNAGI 193 P IDLSGMTCAP+LYAVE LK AA+RALRE+P LLTSAMP NGNATFRQ VARRALNAG+ Sbjct: 149 PHIDLSGMTCAPQLYAVETLKQAAMRALRERPELLTSAMPHNGNATFRQAVARRALNAGM 208 Query: 194 RIGADDVVVTHGCIEALNLALRAVAQAGDTIAVESPTYFGLLQTLESLGMRALEIPTSPQ 253 RI ++VVVTHGCIEALNLA+RAVA GDTIAVESPTYFGLLQ LE+LGM+ALEIPTSP Sbjct: 209 RIDTEEVVVTHGCIEALNLAMRAVAGPGDTIAVESPTYFGLLQALENLGMKALEIPTSPH 268 Query: 254 TGISIEALELAIQTYGNIKAVVVVPTLQNPLGCIMPDAHKERLVALCERCAVPLIEDDAY 313 TGIS+EALELA++TYGNIKAVVVVP LQNPLGCIMP+ HK++LV LC++ +PLIEDDAY Sbjct: 269 TGISVEALELAVRTYGNIKAVVVVPNLQNPLGCIMPEDHKDQLVRLCDQLKLPLIEDDAY 328 Query: 314 SELADGDVAPSAAKVWDRSGNVIYCASLNKVLAPGMRLGWMTSGKWHERVKMLKFAYTRA 373 +ELADG V PS+ K DR+GNVIYCASLNKVLAPGMRLGWM G+WHERVKMLKF +TRA Sbjct: 329 TELADGSVTPSSLKSRDRNGNVIYCASLNKVLAPGMRLGWMNGGRWHERVKMLKFTHTRA 388 Query: 374 NEEWTQITAANYMGSPAYDRHLRRLRGSLKEQREQMAEAIAGYFPPETRLSVPNGGVGLW 433 NEEWTQ+TAA+++ SPAYDRHLRRLR LK+QRE+MAE+IA YFP TRL++PNGGVGLW Sbjct: 389 NEEWTQVTAADFIASPAYDRHLRRLRQMLKQQRERMAESIAAYFPEGTRLNLPNGGVGLW 448 Query: 434 VELPRGLSSKAVFAAALNQGIGVSPGVIFSNSDRFDHYLRLCCGKPFTHELDQALRKLGG 493 VELP + S+ +F AL +G+GVSPG IFSNS R+ H++R+CCG PF ELDQALR+LGG Sbjct: 449 VELPVQVCSQQLFERALAEGVGVSPGAIFSNSSRYGHFVRICCGHPFNRELDQALRRLGG 508 Query: 494 IVERM 498 +V + Sbjct: 509 LVHHL 513 >gi|300311016|ref|YP_003775108.1| MocR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 480 Score = 334 bits (856), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 187/484 (38%), Positives = 284/484 (58%), Gaps = 17/484 (3%) Query: 26 PIYRRLAEHYLSAIQSGTLAPGDRMPSVRDLMRQHHVSLSTALQTLRHLEEGGWLEARPR 85 P+Y++ A+ ++I+ G L PG+R+ SVR +QH VS++T ++ LE G +E++P+ Sbjct: 5 PLYKQFADQLAASIRDGVLRPGERIASVRIASQQHKVSVTTVVRAYELLESRGIIESQPQ 64 Query: 86 SGYFVRQ----PRRATIRPVGEPNILAPLDPAQYVGIHEQVSDFIA---RRQLQAPTIDL 138 SGYFVR+ P + +R + PA VS + + Q T+ L Sbjct: 65 SGYFVREQPEAPPKPALRTTSRED-----HPAWQESTEVDVSRLVLATLKTIQQDGTVPL 119 Query: 139 SGMTCAPELYAVEALKNAAIRALRE--QPSLLTSAMPINGNATFRQVVARRALNAGIRIG 196 P L+ L A R R Q S+ P G+ + +ARR L G+++ Sbjct: 120 GSPYPNPALFPSHRLAQYAGRIARHASQSSVFDDLPP--GHPELLRQIARRYLENGLKVD 177 Query: 197 ADDVVVTHGCIEALNLALRAVAQAGDTIAVESPTYFGLLQTLESLGMRALEIPTSPQTGI 256 +++V+T G EA+NL L+AVA+ GDTIAVE+PT++ +L +E LGMRALEIPT PQ GI Sbjct: 178 PEEIVITVGATEAINLCLQAVARPGDTIAVETPTFYAMLHAIERLGMRALEIPTDPQRGI 237 Query: 257 SIEALELAIQTYGNIKAVVVVPTLQNPLGCIMPDAHKERLVALCERCAVPLIEDDAYSEL 316 + ALE ++T I A +V+P QNPLG MPD+ KERLV L E+ +P+IE+ YSEL Sbjct: 238 DVGALEERMKTQA-IAACMVMPNFQNPLGFQMPDSEKERLVRLAEQHQMPVIENAVYSEL 296 Query: 317 ADGDVAPSAAKVWDRSGNVIYCASLNKVLAPGMRLGWMTSGKWHERVKMLKFAYTRANEE 376 G+ PS+ K +DR G V++C+S +K L R+GW G++ +V+ LKF T A Sbjct: 297 YYGNAHPSSLKNYDRDGLVLHCSSFSKSLTSAYRIGWAMPGRYRAQVEKLKFLNTLATPT 356 Query: 377 WTQITAANYMGSPAYDRHLRRLRGSLKEQREQMAEAIAGYFPPETRLSVPNGGVGLWVEL 436 Q A Y+ Y+RHLRR+R + +QR+ M + +FP T++S P GG LWVEL Sbjct: 357 APQRAIAEYLTQGGYERHLRRVRRAFAQQRDMMRHFVLRFFPAGTQVSEPQGGYVLWVEL 416 Query: 437 PRGLSSKAVFAAALNQGIGVSPGVIFSNSDRFDHYLRLCCGKPFTHELDQALRKLGGIVE 496 P+G+ + ++ +L GI V+PG IF+ ++R+ H++RL ++ E +QAL+ +G +VE Sbjct: 417 PQGVDAMELYRRSLALGITVAPGRIFAATNRYSHFIRLNYSYAWSKETEQALKLVGKLVE 476 Query: 497 RMPG 500 + G Sbjct: 477 ELAG 480 >gi|300311139|ref|YP_003775231.1| MocR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 398 Score = 143 bits (361), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 101/360 (28%), Positives = 170/360 (47%), Gaps = 7/360 (1%) Query: 138 LSGMTCAPELYAVEALKNAAIRALREQPSLLTSAMPINGNATFRQVVARRALNAGIRIGA 197 +G +P + VE +K A R L +Q + P +G R+ +A G +I A Sbjct: 40 FAGGLPSPLTFPVEHMKTAFDRVLSQQGKMALQYGPTDGYLPLREWIAASLSTNGAQISA 99 Query: 198 DDVVVTHGCIEALNLALRAVAQAGDTIAVESPTYFGLLQTLESLGMRALEIPTSPQTGIS 257 + V++ G + L+L + + G + VE+P+Y G LQ G + +P S + G+ Sbjct: 100 EQVLMVSGSQQGLDLLGKVLIDEGSKVLVETPSYLGALQAFALYGAKFESVP-SDEFGLQ 158 Query: 258 IEALELAIQTYGNIKAVVVVPTLQNPLGCIMPDAHKERLVALCERCAVPLIEDDAYSELA 317 E +E AI G + + +P QNP G +P + +LV C R +PLIEDD Y L+ Sbjct: 159 PETIE-AIA--GGARMLYSLPNFQNPTGRTLPTERRFKLVETCARLGLPLIEDDPYGALS 215 Query: 318 DGDVAPSAAKVWDRSGNVIYCASLNKVLAPGMRLGWMTSGK-WHERVKMLKFAYTRANEE 376 + AP + VIY S +KVL PG+RLG++ + + +++ K A + Sbjct: 216 YQN-APLPKMLSMNPSGVIYMGSFSKVLTPGIRLGYVVAPRPLILKMEQAKQATDLHTAQ 274 Query: 377 WTQITAANYMGSPAYDRHLRRLRGSLKEQREQMAEAIAGYFPPETRLSVPNGGVGLWVEL 436 TQ+ + D+H+ +R +Q + M +A+ YFP S P GG+ +WV L Sbjct: 275 LTQMVVYEAIKDGFLDQHVPTIRKLYGDQCQAMLDALQQYFPASCSWSKPEGGMFIWVTL 334 Query: 437 PRGLSSKAVFAAALNQ-GIGVSPGVIFSNSDRFDHYLRLCCGKPFTHELDQALRKLGGIV 495 P + + A+ A+ Q + PG F + + LRL ++ + +LG ++ Sbjct: 335 PEHIDAGALLNEAVEQEKVAFVPGAPFYANVAQKNTLRLSFVTVPPEQIRAGVERLGKLI 394 >gi|300313928|ref|YP_003778020.1| GntR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 472 Score = 131 bits (330), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 120/459 (26%), Positives = 198/459 (43%), Gaps = 25/459 (5%) Query: 39 IQSGTLAPGDRMPSVRDLMRQHHVSLSTALQTLRHLEEGGWLEARPRSGYFVRQPRRATI 98 I++G L G+R+PSVR + H + ST ++ L G L+AR +G+FV A Sbjct: 33 IETGELRSGERLPSVRQFAQHHDIGSSTVVEAYEQLVARGMLQARRGAGFFVA----ARA 88 Query: 99 RPVGEPNILAPLDPAQYVG--IHEQVSDFIARRQLQAPTIDLSGMTCAPELYAVEALKNA 156 G+ + P +P + E +D R ++A L G + E L A Sbjct: 89 GQSGQHAVFVPPEPVIDSAWLLSEMFAD--ERVPIKAGCGWLPG-----KWLNDEGLHQA 141 Query: 157 AIRALREQPSLLTSAMPINGNATFRQVVARRALNAGIRIGADDVVVTHGCIEALNLALRA 216 R +R + G A RQ++ + + + +G + V+ THG +AL+L +R Sbjct: 142 ERRIIRSPGAQQVGYGHPYGYAPLRQLITQFLGHWSLELGIEQVLTTHGATQALDLVIRT 201 Query: 217 VAQAGDTIAVESPTYFGLLQTLESLGMRALEIPTSPQTGISIEALELAIQTYGNIKAVVV 276 + Q GDT+ ++ P Y L+ L G+ + +P +P G+ + LE +T+ + K Sbjct: 202 MTQPGDTVLIDDPGYCNLIAMLRLAGLNVIGVPRTP-GGVDTDVLETLARTH-HPKMFFT 259 Query: 277 VPTLQNPLGCIMPDAHKERLVALCERCAVPLIEDDAYSELADGDVAPSAAKVWDRSGNVI 336 LQNP G A R++ ER ++EDD + EL G D VI Sbjct: 260 TSVLQNPTGTSYTPACAMRVLQAAERHGFWVVEDDIFREL--GQATDPMLAALDGLQRVI 317 Query: 337 YCASLNKVLAPGMRLGWMTSGKWHER-VKMLKFAYTRANEEWTQITAANYMGSPAYDRHL 395 Y S +K +AP +R+G++ + R + K T N E + N + + RH+ Sbjct: 318 YVGSYSKTIAPSLRVGYIACQRELARQIVHTKMVLTLTNSEINERLVHNVLTEGHHRRHV 377 Query: 396 RRLRGSLKEQREQMAEAIA--GYFPPETRLSVPNGGVGLWVELPR-GLSSKAVFAAALNQ 452 + L +L + + ++ G P + GG+ W + LS++ + A + Sbjct: 378 QTLNATLLSAQATLNAKLSEVGLTP----FTAARGGMFSWATIEGCELSAREIADRARQK 433 Query: 453 GIGVSPGVIFSNSDRFDHYLRLCCGKPFTHELDQALRKL 491 GI ++PG F S R G EL LR L Sbjct: 434 GIWLAPGDFFHLSAPHQTSFRFNVGYADVPELFDFLRGL 472 >gi|300310416|ref|YP_003774508.1| MocR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 516 Score = 119 bits (297), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 115/446 (25%), Positives = 201/446 (45%), Gaps = 23/446 (5%) Query: 23 PALPIYRRLAEHYLSAIQSGTLAPGDRMPSVRDLMRQHHVSLSTALQTLRHLEEGGWLEA 82 P P+ R++ + AI + TL G ++PS RDL + S +T L G+LE+ Sbjct: 41 PRTPVNRQIYQLIREAILAHTLPAGMQLPSSRDLALELGSSRNTVTYAYEQLLAEGYLES 100 Query: 83 RPRSGYFVRQPRRATI-------RPVGEPNILAPLDPAQYVGIHEQVSDFIARRQLQAPT 135 RP +G FV I P+ +P+ + L A+ + Q + RQ A Sbjct: 101 RPGAGTFVADTAPDQIPEAVERPEPLTDPSGKSELS-ARGAMLTRQAG--VGERQWGAFM 157 Query: 136 IDLSGMTCAPELYAVEA-LKNAAIRALREQPSLLTSAMPINGNATFRQVVARRALNA-GI 193 + +TC P Y + L+N R R LLT P G A R+ +A A + Sbjct: 158 PGVPDVTCVP--YKIWGRLQNKHWR--RSNADLLTYG-PGAGYAGLREQIAEYLRVARSV 212 Query: 194 RIGADDVVVTHGCIEALNLALRAVAQAGDTIAVESPTYFGLLQTLESLGMRALEIPTSPQ 253 V++T G ++L++ ++ + + GD+ VE P Y+G L SLG++++ I Q Sbjct: 213 NCTPSQVLITTGIHQSLDIVVKLLGEHGDSAWVEDPCYWGTRSVLNSLGIQSVPIAVD-Q 271 Query: 254 TGISIEALELAIQTYGNIKAVVVVPTLQNPLGCIMPDAHKERLVALCERCAVPLIEDDAY 313 G+ + L + + P+ Q PLG +M + + L+ V +IEDD Sbjct: 272 EGMRMRLANLRRPP----RFICTTPSHQYPLGMVMSLSRRRMLLEYAATHKVWIIEDDYD 327 Query: 314 SELADGDVAPSAAKVWDRSGNVIYCASLNKVLAPGMRLGWMTSGKWHERVKMLKFA-YTR 372 SE G ++ + D V+Y + +K++ PG+R+G++ + R A R Sbjct: 328 SEFRYGGRPLASLQGMDTQDRVLYMGTFSKIMFPGLRIGFLVVPESLARAFSTGIAELYR 387 Query: 373 ANEEWTQITAANYMGSPAYDRHLRRLRGSLKEQREQMAEAIAGYFPPETRLSVPNGGVGL 432 + + Q T A++M + H+R++R E+ + + ++I +F + ++ G+ L Sbjct: 388 NGQVFLQATLADFMAEGHFASHIRKMRVLYAERLQLLQQSINRHFGEKMTITGGEAGLHL 447 Query: 433 WVELPRGLSSKAVFAAALNQGIGVSP 458 + LP+ + AL GI V P Sbjct: 448 VLGLPQECDDVLICEQALAAGIVVRP 473 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.135 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,585,241 Number of extensions: 69486 Number of successful extensions: 278 Number of sequences better than 1.0e-08: 10 Number of HSP's gapped: 259 Number of HSP's successfully gapped: 10 Length of query: 500 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 411 Effective length of database: 1,198,455 Effective search space: 492565005 Effective search space used: 492565005 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)