BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0278.p
         (250 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311070|ref|YP_003775162.1| CDP-diacylglycerol--serine O-ph...   451   e-128

>gi|300311070|ref|YP_003775162.1| CDP-diacylglycerol--serine
           O-phosphatidyltransferase [Herbaspirillum seropedicae
           SmR1]
          Length = 286

 Score =  451 bits (1159), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 229/244 (93%), Positives = 237/244 (97%)

Query: 6   RSRGIYLLPNAFTTAALFCGFYAIVMAMNLKFDHASIAIFVAMVLDSLDGRVARMTNTQS 65
           RSRGIYLLPNAFTTAALFCGFYAIVMAMNLKFD+ASIAIFVAMVLDSLDGRVARMTNTQS
Sbjct: 38  RSRGIYLLPNAFTTAALFCGFYAIVMAMNLKFDYASIAIFVAMVLDSLDGRVARMTNTQS 97

Query: 66  EFGAQYDSLSDMVSFGAAPALVVYEWSLRGMGKLGWLAAFVYCVGGALRLARFNTNIAVV 125
           EFGAQYDSLSDMVSFGAAPALVVYEWSLRGMGKLGWLAAFVYC GGALRLARFNTNIAVV
Sbjct: 98  EFGAQYDSLSDMVSFGAAPALVVYEWSLRGMGKLGWLAAFVYCAGGALRLARFNTNIAVV 157

Query: 126 DKRYFQGLPSPAAAALVAGFVWLMDDLRFAGTDLSWAAWIITLYAGITMVTNVPFYSFKD 185
           DKRYFQGLPSPAAAALVAGFVWLMDDLRFAGTDLSW AW+ITLYAG+TMVTNVPFYSFKD
Sbjct: 158 DKRYFQGLPSPAAAALVAGFVWLMDDLRFAGTDLSWYAWVITLYAGVTMVTNVPFYSFKD 217

Query: 186 INFRKPVPFIAALLVVVLLVVISSDPSKVLFGLFVLYGLSGYIVYAWRKIKGKPVSIVQT 245
           +NFRKPVPFIAALLVVV LV+ISSDPSKVLFGLFVLYGLSGY VY WR++KGKPVSIVQT
Sbjct: 218 VNFRKPVPFIAALLVVVALVLISSDPSKVLFGLFVLYGLSGYGVYLWRRLKGKPVSIVQT 277

Query: 246 EHEE 249
           + E 
Sbjct: 278 KDEH 281


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.140    0.431 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 787,925
Number of extensions: 31346
Number of successful extensions: 108
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 167
Effective length of database: 1,226,865
Effective search space: 204886455
Effective search space used: 204886455
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 129 (54.3 bits)