BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0271.p
         (271 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313096|ref|YP_003777188.1| pyrroline-5-carboxylate reducta...   362   e-101

>gi|300313096|ref|YP_003777188.1| pyrroline-5-carboxylate reductase
           [Herbaspirillum seropedicae SmR1]
          Length = 270

 Score =  362 bits (929), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 185/269 (68%), Positives = 217/269 (80%)

Query: 2   LKIGFIGGGNMAAALIGGLAGKLTDGKNIHVVDLNPESLEKLNQRFGVTTALQVDEMLAK 61
           +KI FIGGGNMAAALIGGL GK+   ++IHVVDLN ++L  L  RFGV+ A  +D  LA 
Sbjct: 1   MKIAFIGGGNMAAALIGGLVGKVAAAQDIHVVDLNAQALASLKDRFGVSVAPAMDGALAS 60

Query: 62  VDVIVLAVKPQQMRQVADSLKPFIGAQLVLSIAAGIRSADLSRWLGNHPAIVRSMPNTPA 121
            DV+VLAVKPQQMR V  SLKPFIGAQLV+SIAAGIR  DLSRWL  H AIVR+MPNTPA
Sbjct: 61  ADVVVLAVKPQQMRDVVGSLKPFIGAQLVVSIAAGIRMVDLSRWLDGHEAIVRAMPNTPA 120

Query: 122 LIGKGISGMVALDGVSAGQRAAADAILRAVGATVWLDSEDLIDPVTAVSGSGPAYVFYFM 181
           LIGKGI+G+V  + VS  QRA AD+IL+AVG T+WL  E  ID VTAVSGSGPAYVFYF+
Sbjct: 121 LIGKGITGLVPHEKVSTLQRAQADSILKAVGQTLWLSDEAQIDAVTAVSGSGPAYVFYFL 180

Query: 182 EAMQKAAVELGLSAEQGVELAKATFAGAVELAIRSPEPLSLLRERVTSKGGTTYAALTSM 241
           EAM++AA +LGLS  +G+ELAKATF GA ELA RS E ++ LRERVTSKGGTTYAALTS+
Sbjct: 181 EAMEQAAAQLGLSPAEGLELAKATFEGATELARRSEESVATLRERVTSKGGTTYAALTSL 240

Query: 242 QGAGVAEHIVTAVKAAAARGKELGEEFGK 270
           + +GV + IV A++AAA R KELG+EFGK
Sbjct: 241 EQSGVKDAIVKALQAAAVRSKELGDEFGK 269


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.133    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 782,778
Number of extensions: 32890
Number of successful extensions: 189
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 189
Number of HSP's successfully gapped: 1
Length of query: 271
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 187
Effective length of database: 1,222,130
Effective search space: 228538310
Effective search space used: 228538310
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 130 (54.7 bits)