BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0253.p
         (136 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311062|ref|YP_003775154.1| hypothetical protein Hsero_1733...   160   4e-41

>gi|300311062|ref|YP_003775154.1| hypothetical protein Hsero_1733
           [Herbaspirillum seropedicae SmR1]
          Length = 136

 Score =  160 bits (405), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 94/137 (68%), Positives = 111/137 (81%), Gaps = 6/137 (4%)

Query: 1   MNNKELQFAYRVKRALDANLEHLPESTTQSLAEARRVALARKKTTAPVRVAASQFALAGA 60
           MNNKE+QFAY+VK ALDANL++L + T QSLA ARRVALARKK T P+ V   Q  LAGA
Sbjct: 1   MNNKEMQFAYKVKLALDANLDNLSDDTLQSLAAARRVALARKKQT-PMTVRVEQPVLAGA 59

Query: 61  MG---GNFTPSSSFSWLGRLGVAIPLLAGVMLFAGLYEHEHQQRISALAEIDAGVLSDEL 117
            G   G  +P +S  WLGRLGVA PLLAG++LFAGLY+HE+ +R+S LA+IDA VLSDEL
Sbjct: 60  FGSAGGMLSPKAS--WLGRLGVAAPLLAGIILFAGLYQHENAKRVSYLADIDAAVLSDEL 117

Query: 118 PLSAYLDHGFNAYLAQQ 134
           PLSAYLDHGFNAYLA++
Sbjct: 118 PLSAYLDHGFNAYLAEK 134


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.131    0.369 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 440,238
Number of extensions: 18370
Number of successful extensions: 70
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 1
Length of query: 136
Length of database: 1,619,870
Length adjustment: 76
Effective length of query: 60
Effective length of database: 1,260,010
Effective search space: 75600600
Effective search space used: 75600600
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 125 (52.8 bits)