BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0247.p
         (280 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311057|ref|YP_003775149.1| hypothetical protein Hsero_1728...   365   e-102

>gi|300311057|ref|YP_003775149.1| hypothetical protein Hsero_1728
           [Herbaspirillum seropedicae SmR1]
          Length = 281

 Score =  365 bits (937), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 184/271 (67%), Positives = 210/271 (77%), Gaps = 3/271 (1%)

Query: 12  PDDKFSVLSELRRAALRWLVHTDSAAKAAGVRAMSQAWHAGELTLDRDVALFTD--APVP 69
           PD+ FS  + LR  AL  L  T  AAK + VRA+  AW  G L L+ +    T+  + +P
Sbjct: 7   PDEVFS-FTGLRSGALSCLKETRPAAKCSAVRALRAAWQQGRLPLETEDLAVTEPGSGIP 65

Query: 70  GRPAHPELVSPLLVKSRSMRTDEGRAAMIHALAHIEFNAINLALDVIWRFPDMPEAFYVD 129
           GRP  PELVSPL VK RSM T EGRAA+IHALAHIEFNAINLALD +WRF  MP  FYVD
Sbjct: 66  GRPERPELVSPLQVKHRSMGTPEGRAALIHALAHIEFNAINLALDAVWRFAGMPRDFYVD 125

Query: 130 WLKVADEEAYHFSLLEAHLQVLGYAYGDFTAHNSLWDMAEKTKDDILARIALVPRTMEAR 189
           WL+VADEEAYHF LL  HL  LG+AYGDFTAHN+LWDMAE TK D+LARIALVPRT+EAR
Sbjct: 126 WLQVADEEAYHFRLLADHLSTLGHAYGDFTAHNALWDMAESTKGDVLARIALVPRTLEAR 185

Query: 190 GLDAAPPVRNKLAQAGDHAAAAILDIIMRDEIGHVAIGNRWYGWLCGQRGLDPIATFARL 249
           GLDAAPPVR KLAQAGD AAA ILDIIMRDE+GHV IGNRW+ WLC QR LDP+ATFA+L
Sbjct: 186 GLDAAPPVRAKLAQAGDLAAAEILDIIMRDEVGHVLIGNRWFNWLCEQRQLDPVATFAQL 245

Query: 250 TVEFKAPAMRGPFNMEARRAAGFTEAELALM 280
               KAP +RGPFN+EARRAAGF++ E+ + 
Sbjct: 246 CQRHKAPPLRGPFNLEARRAAGFSDEEMLMF 276


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.135    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 945,594
Number of extensions: 39691
Number of successful extensions: 109
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 196
Effective length of database: 1,222,130
Effective search space: 239537480
Effective search space used: 239537480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 130 (54.7 bits)