BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0245.p
         (317 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311055|ref|YP_003775147.1| redox regulated molecular chape...   506   e-144

>gi|300311055|ref|YP_003775147.1| redox regulated molecular
           chaperone heat-shock-like protein [Herbaspirillum
           seropedicae SmR1]
          Length = 309

 Score =  506 bits (1303), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 240/310 (77%), Positives = 271/310 (87%), Gaps = 1/310 (0%)

Query: 8   MKDTLQKFMVENAPVRGELVEISSTWQQVLARRDYPVAVKALLGQMLSAAALLTANLKFN 67
           MKDTLQKF+V+NAPVRGELVEIS TW+QV ARRDYPVAV+ LLG+ML+A+ALL+ANLKFN
Sbjct: 1   MKDTLQKFLVDNAPVRGELVEISDTWRQVQARRDYPVAVRTLLGEMLAASALLSANLKFN 60

Query: 68  GMVVMQIHGDGPVRLLVVECDSELRLRATAKLVEDAEVADDATLTQLVNANGEGRFAITL 127
           GM+VMQIHGDGPV+LLVVECDSEL+LRATAKL + AE+ADDATLT LVNANG GRF ITL
Sbjct: 61  GMIVMQIHGDGPVKLLVVECDSELQLRATAKLADGAEIADDATLTDLVNANGHGRFVITL 120

Query: 128 DPKDKMPGQQAYQGIVPLDGDTVATVIENYMLRSEQLDTKLWLAADDKVARGLLLQKLPN 187
           DPKDK+PGQQAYQG+VPLDG++VATVIENYMLRSEQLDTKLWLAAD+ V+RGLLLQKLP+
Sbjct: 121 DPKDKLPGQQAYQGVVPLDGESVATVIENYMLRSEQLDTKLWLAADENVSRGLLLQKLPS 180

Query: 188 HGGKDVGKAAPEEELETWNRLSMLGNTLRAEELLSTDIETLMHRLFWEETIRVFDPAHPE 247
            GG     A PE ELE WN + MLG+TL+ EELLSTDI TLMHRLFWE+TIRVFDP HP+
Sbjct: 181 IGGTAAPTAKPEGELEDWNHMVMLGDTLKREELLSTDIATLMHRLFWEQTIRVFDPVHPQ 240

Query: 248 FHCTCSREKVGNMLKMLGQAEVEDALSTQEKLSVDCDFCGLHYEFDAVDCAQIFRTETPA 307
           FHC+CSREKVGNMLKMLGQ EV +ALS  EKL++DCDFCG HYEFDAVDCAQ+F  +   
Sbjct: 241 FHCSCSREKVGNMLKMLGQEEVAEALSQMEKLAIDCDFCGQHYEFDAVDCAQLFVADV-G 299

Query: 308 DAVPQTDTRH 317
            A    D RH
Sbjct: 300 GANEAGDARH 309


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.317    0.133    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 956,195
Number of extensions: 37449
Number of successful extensions: 100
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 100
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 232
Effective length of database: 1,217,395
Effective search space: 282435640
Effective search space used: 282435640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 130 (54.7 bits)