BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0240.p
         (402 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311050|ref|YP_003775142.1| esterase_lipase superfamily pro...   324   9e-90
gi|300311051|ref|YP_003775143.1| hypothetical protein Hsero_1722...   118   1e-27
gi|300310635|ref|YP_003774727.1| 3-ketoadipate enol-lactone hydr...    67   2e-12

>gi|300311050|ref|YP_003775142.1| esterase_lipase superfamily
           protein [Herbaspirillum seropedicae SmR1]
          Length = 251

 Score =  324 bits (830), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 169/246 (68%), Positives = 196/246 (79%)

Query: 148 MPFVVSTGRRIHYEVSGQGPDLFLHHGFTSSSQAWRFFGFTEVLQQHYRVIALDALGHGL 207
           MPF +S  R+IHY+V G+GP L LHHGFTSS +AWRFFGFT+VL+QHYRVI+ DALGHG 
Sbjct: 1   MPFAISDQRKIHYQVEGEGPPLLLHHGFTSSLEAWRFFGFTDVLRQHYRVISFDALGHGQ 60

Query: 208 SDKPRETEAYTLQQRSADVVAVLDDLGIGKVHYCGYSLGGWVGYGMVRHARERLQSLTLG 267
           SDKP ++ AY+  QR  D +AVLD   + + H+ GYSLGGWVGYG+VR A ERL+SL LG
Sbjct: 61  SDKPHDSAAYSQHQRCRDALAVLDAAQVERTHFFGYSLGGWVGYGLVRQAPERLRSLILG 120

Query: 268 AAHPYADTSWDAFKGLDGTDVNAFITAFESVLNERISPEVKMMIRANDLQALAAAAQQPR 327
           AAHPY D SW+ F+G+DGTD  AFI AFE +L+E ISP+VKM+IR NDL ALAAAAQQ R
Sbjct: 121 AAHPYEDRSWEVFRGIDGTDPEAFIAAFEDLLDEAISPQVKMLIRGNDLVALAAAAQQAR 180

Query: 328 VSMEELLPLIDLPCLMFCGDADARHAAVGRCVGLLPRARFVSLPGVTHFGGLMQSKLVLP 387
            S EELL  +DLPCL FCGDADARH AV R    L RA FVSLPGVTHFGGLMQS LVLP
Sbjct: 181 PSQEELLARMDLPCLFFCGDADARHTAVARTAARLARAEFVSLPGVTHFGGLMQSALVLP 240

Query: 388 PLLEFL 393
           P+L+FL
Sbjct: 241 PVLDFL 246


>gi|300311051|ref|YP_003775143.1| hypothetical protein Hsero_1722
          [Herbaspirillum seropedicae SmR1]
          Length = 179

 Score =  118 bits (295), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 52/77 (67%), Positives = 64/77 (83%)

Query: 5  SIPEGYSSVTPYLIVSDTASAITFYKKAFDATEVMRIDGPHNKIWHAEIQIGNARVMLAD 64
          ++P GY SVTPYLIV  +A AI FY++AFDA E+MR+DGPH KIWHAE+QIG+AR+MLAD
Sbjct: 22 ALPAGYHSVTPYLIVHASAEAIAFYQRAFDAVEIMRLDGPHGKIWHAELQIGDARIMLAD 81

Query: 65 EFIEMGIHCPKTLGGAG 81
          E  E+G   P+TLGGAG
Sbjct: 82 EHPELGFFSPQTLGGAG 98


>gi|300310635|ref|YP_003774727.1| 3-ketoadipate enol-lactone
           hydrolase [Herbaspirillum seropedicae SmR1]
          Length = 261

 Score = 67.0 bits (162), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/124 (34%), Positives = 64/124 (51%), Gaps = 12/124 (9%)

Query: 148 MPFVVSTGRRIHYEVSGQG--PDLFLHHGFTSSSQAWRFFGFTEVLQ--QHYRVIALDAL 203
           MPF      R+HY++ G    P L L +   +S   W      ++ Q  QH+RV+  D  
Sbjct: 1   MPFANVNAIRLHYQLEGDASLPVLVLSNSLGTSLSMWD----PQMPQWLQHFRVLRYDTR 56

Query: 204 GHGLSD-KPRETEAYTLQQRSADVVAVLDDLGIGKVHYCGYSLGGWVGYGMVRHARERLQ 262
           GHG S+  P E    ++ Q  +DV+A+LD LGI + H+CG S+GG     +  H  +R+ 
Sbjct: 57  GHGQSEVTPGEC---SIAQLGSDVIALLDHLGIAQAHFCGLSMGGSTFMWLAVHHPQRIN 113

Query: 263 SLTL 266
            L L
Sbjct: 114 KLIL 117


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.138    0.419 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,175,410
Number of extensions: 47134
Number of successful extensions: 157
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 159
Number of HSP's successfully gapped: 3
Length of query: 402
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 315
Effective length of database: 1,207,925
Effective search space: 380496375
Effective search space used: 380496375
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 132 (55.5 bits)