BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0239.p
         (143 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309909|ref|YP_003774001.1| transcription regulator protein...   102   1e-23
gi|300309900|ref|YP_003773992.1| transcription regulator protein...    92   1e-20

>gi|300309909|ref|YP_003774001.1| transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 124

 Score =  102 bits (254), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 47/100 (47%), Positives = 65/100 (65%)

Query: 15  DIYSLACPSRKALELVGSKWALLIFPALAAGPMRNSALLRKIEGISQKMLTQTLKELERN 74
            ++   CP+R  L L+  KW LL+  AL+    R + L R+I G+S+KML Q L+ LE++
Sbjct: 14  SVFLADCPARDVLALLAEKWTLLVLHALSEKTYRTAELRRRIGGVSEKMLIQALRRLEQH 73

Query: 75  GLVTRCNLETAAPHVEYELSPLGESLSDTLIALDNWAERH 114
           GLV+R + +T  PHVEY L+PLG SLS  + ALD W E H
Sbjct: 74  GLVSRMSYQTVPPHVEYSLTPLGVSLSSIVCALDTWVETH 113


>gi|300309900|ref|YP_003773992.1| transcription regulator protein
           [Herbaspirillum seropedicae SmR1]
          Length = 132

 Score = 92.0 bits (227), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 47/106 (44%), Positives = 68/106 (64%)

Query: 23  SRKALELVGSKWALLIFPALAAGPMRNSALLRKIEGISQKMLTQTLKELERNGLVTRCNL 82
           +R+ L+ VG KW+L I   LA G  R + L R+I+GISQ+MLT TL+ LER+GL+TR   
Sbjct: 23  TREILDRVGDKWSLYIIATLANGTRRFNELKREIDGISQRMLTLTLRGLERDGLITRTIY 82

Query: 83  ETAAPHVEYELSPLGESLSDTLIALDNWAERHHADLQRAREQFDNE 128
            T  P V+YEL+ LG +L   +++L  WA+ +   +  AR  FD +
Sbjct: 83  PTIPPRVDYELTALGMTLWGPVMSLVKWADANKLAISAARAHFDTK 128


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.131    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 425,543
Number of extensions: 15661
Number of successful extensions: 53
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 54
Number of HSP's successfully gapped: 3
Length of query: 143
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 66
Effective length of database: 1,255,275
Effective search space: 82848150
Effective search space used: 82848150
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 126 (53.1 bits)