BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0236.p
         (139 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311048|ref|YP_003775140.1| histone acetyltransferase HPA2 ...   202   6e-54

>gi|300311048|ref|YP_003775140.1| histone acetyltransferase HPA2
           protein [Herbaspirillum seropedicae SmR1]
          Length = 161

 Score =  202 bits (515), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 95/138 (68%), Positives = 113/138 (81%)

Query: 2   LDAYASDLMGGGEGISDFVRAHLIGELRKRPAVHVFLAFDGEQAAGFANCIEGFSSFACK 61
           L+AYASD MGGG+ +SD+VR +L  EL+KRP  HVFLAFDG+  AG A CIEGFS+FAC 
Sbjct: 23  LNAYASDAMGGGKQLSDYVRENLAAELKKRPTAHVFLAFDGDTPAGLATCIEGFSTFACH 82

Query: 62  PLLNIHDFAVAPAYRGHGIAKLLMQAVEDCARELGCCKITLEVLEGNTVARSLYASTGFV 121
           PLLN+HD AV PAYRG G+AK L+ AVE+ AR+LGCCK+TLEVLEGNTVARSLY + GF 
Sbjct: 83  PLLNVHDLAVMPAYRGQGLAKQLLAAVEEEARKLGCCKLTLEVLEGNTVARSLYRACGFE 142

Query: 122 GYELDPSSGKAIFMHRLL 139
           GYEL   +GKA+FMH+ L
Sbjct: 143 GYELKAETGKAMFMHKPL 160


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.325    0.141    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 462,571
Number of extensions: 17827
Number of successful extensions: 68
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 1
Length of query: 139
Length of database: 1,619,870
Length adjustment: 76
Effective length of query: 63
Effective length of database: 1,260,010
Effective search space: 79380630
Effective search space used: 79380630
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 126 (53.1 bits)