BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0233.p
         (217 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311714|ref|YP_003775806.1| periplasmic or secreted lipopro...   266   9e-73
gi|300311708|ref|YP_003775800.1| periplasmic or secreted lipopro...   162   2e-41

>gi|300311714|ref|YP_003775806.1| periplasmic or secreted
           lipoprotein [Herbaspirillum seropedicae SmR1]
          Length = 216

 Score =  266 bits (680), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 128/213 (60%), Positives = 167/213 (78%)

Query: 1   MKTDFQIKQDVADELAWDAAVNDNEIGVEVRDGIVTLTGNLDSYAEKYAAEKAAQRVAGV 60
           MK+D Q++Q+V DELAWD AV+D  IGVEV +GIVTL G+L SYAEKYAA++A +R+ GV
Sbjct: 1   MKSDHQLRQEVMDELAWDPAVDDKRIGVEVSEGIVTLAGHLSSYAEKYAAQRAVERIGGV 60

Query: 61  KGLAVEIDVVLPGSSCRTDADIVRTASHGLEWNALVPKDSVKIMVEDGWITLSGEVDHQY 120
           +G+AVE+DV LPGSS R D++I  +A + LEWN ++PK+ ++I VEDGWITLSGEV+  Y
Sbjct: 61  RGIAVELDVRLPGSSERLDSEIAASARNALEWNTVLPKEGIQIKVEDGWITLSGEVEFAY 120

Query: 121 QRMAAENALRSLLGVIGISNQIAVKHVARPADIKTHIEAALQRRAHSTVKAIEVAVNGDQ 180
           QR+AAE +LR+L G+IGISNQ+ V+  A P DIKT IEAALQRRAH   K++ V V+   
Sbjct: 121 QRLAAEQSLRNLFGLIGISNQLKVEAKAAPKDIKTGIEAALQRRAHLQTKSLRVQVDNKT 180

Query: 181 ITLNGSVASLAEREEAFAAAARTPGVHKVVDKL 213
           +TL+G V SLAER EA  AA  TPGV +V+D++
Sbjct: 181 VTLSGKVGSLAERHEACKAALHTPGVEQVIDEI 213


>gi|300311708|ref|YP_003775800.1| periplasmic or secreted
           lipoprotein [Herbaspirillum seropedicae SmR1]
          Length = 215

 Score =  162 bits (410), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 94/215 (43%), Positives = 133/215 (61%)

Query: 1   MKTDFQIKQDVADELAWDAAVNDNEIGVEVRDGIVTLTGNLDSYAEKYAAEKAAQRVAGV 60
           M    +++Q + DEL W+ +V+   I V V+DGIVTL+G +  +A+K  AE+AA+RVA V
Sbjct: 1   MSIASELQQKIIDELEWEPSVDARHINVAVKDGIVTLSGYVPRFADKKNAEQAAKRVANV 60

Query: 61  KGLAVEIDVVLPGSSCRTDADIVRTASHGLEWNALVPKDSVKIMVEDGWITLSGEVDHQY 120
           K +  E+ V L G+S R+D +I   A   L  NA +P+D V + V DGW+TL GEV+  Y
Sbjct: 61  KAVVDELLVNLDGASKRSDLEIAEVALTALRANANLPRDKVTVTVADGWVTLDGEVEWHY 120

Query: 121 QRMAAENALRSLLGVIGISNQIAVKHVARPADIKTHIEAALQRRAHSTVKAIEVAVNGDQ 180
           Q  +AEN++R LLGV G+ N+I VK   R  D+K+ I  AL R A      I+VA++   
Sbjct: 121 QHDSAENSVRHLLGVKGVLNKIQVKSNVRVTDVKSKIHDALVRNAQIDASKIDVAIDHGV 180

Query: 181 ITLNGSVASLAEREEAFAAAARTPGVHKVVDKLSI 215
            TL+G V S AE+E A  AA   PGV  V + +S+
Sbjct: 181 ATLSGKVKSWAEKEPAGFAAWSDPGVTVVKNNISV 215


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.129    0.360 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 585,468
Number of extensions: 20756
Number of successful extensions: 108
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 103
Number of HSP's successfully gapped: 2
Length of query: 217
Length of database: 1,619,870
Length adjustment: 81
Effective length of query: 136
Effective length of database: 1,236,335
Effective search space: 168141560
Effective search space used: 168141560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 128 (53.9 bits)