BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0232.p
         (145 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311715|ref|YP_003775807.1| universal stress protein [Herba...   135   2e-33
gi|300313176|ref|YP_003777268.1| universal stress protein [Herba...   126   6e-31
gi|300311605|ref|YP_003775697.1| universal stress protein [Herba...   119   8e-29

>gi|300311715|ref|YP_003775807.1| universal stress protein
           [Herbaspirillum seropedicae SmR1]
          Length = 157

 Score =  135 bits (339), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 73/145 (50%), Positives = 92/145 (63%), Gaps = 1/145 (0%)

Query: 1   MLKKILLATDGSELSKRAVAAAVDFAASYGSKIVGLAVSEIFPSLIMPELGAGYDLQGVE 60
           + KKIL+ TDGS+ S+RAV AAV FA   GS +VGL+V+E      + + G   +   VE
Sbjct: 14  IFKKILVPTDGSDASERAVQAAVQFAKESGSSLVGLSVAEDIVQWAVID-GTAINYLQVE 72

Query: 61  AEIFAQSKLNAGYIADCAKKAGADCEVHTVKGTHANEEILRFAKEYGCDSIFMASHGRKG 120
            EI   +K N   +A  AK A   CE  TVK  H  EEIL  A    CD+IFMASHGRKG
Sbjct: 73  NEILENAKSNVARLAALAKSADVPCETFTVKAVHPYEEILAHASHQHCDAIFMASHGRKG 132

Query: 121 LDKLMLGSETQKVLTYSKIPVLVFK 145
           L++ +LGS+TQKVL  + IPVLVF+
Sbjct: 133 LERFILGSQTQKVLANATIPVLVFR 157


>gi|300313176|ref|YP_003777268.1| universal stress protein
           [Herbaspirillum seropedicae SmR1]
          Length = 145

 Score =  126 bits (317), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 62/145 (42%), Positives = 92/145 (63%)

Query: 1   MLKKILLATDGSELSKRAVAAAVDFAASYGSKIVGLAVSEIFPSLIMPELGAGYDLQGVE 60
           M K IL+ TDGSE S +A+A AVD+A + G++++G+ V+E +P   + E     D    E
Sbjct: 1   MFKTILVPTDGSERSDKAIATAVDYAKNSGARLIGITVAEPYPFSPLAESSMAIDPALYE 60

Query: 61  AEIFAQSKLNAGYIADCAKKAGADCEVHTVKGTHANEEILRFAKEYGCDSIFMASHGRKG 120
             +   ++ +   I D A  AG  C+   V   + +EEI++ A+ + CD+IFMASHGR G
Sbjct: 61  ENVKTLAQQHIKKITDAATAAGVPCQTEIVMSFNPDEEIIKAAQLHACDAIFMASHGRSG 120

Query: 121 LDKLMLGSETQKVLTYSKIPVLVFK 145
           L ++ LGS+TQKVLT+S IPVLV +
Sbjct: 121 LSRIFLGSKTQKVLTHSTIPVLVLR 145


>gi|300311605|ref|YP_003775697.1| universal stress protein
           [Herbaspirillum seropedicae SmR1]
          Length = 145

 Score =  119 bits (299), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 63/145 (43%), Positives = 88/145 (60%)

Query: 1   MLKKILLATDGSELSKRAVAAAVDFAASYGSKIVGLAVSEIFPSLIMPELGAGYDLQGVE 60
           M K ILLATDGS L   +V AA+  A S GS +VGL+VS    +L +PE+  G D+    
Sbjct: 1   MFKNILLATDGSRLCNESVKAAIALAKSCGSSLVGLSVSGNLRALSIPEVSVGVDVARAG 60

Query: 61  AEIFAQSKLNAGYIADCAKKAGADCEVHTVKGTHANEEILRFAKEYGCDSIFMASHGRKG 120
               A++  +   I + A++ G  C V   +G    EEI+R A+   CD+IFMAS  R  
Sbjct: 61  EAGRARALASVEMITEMARQEGVPCSVQVAQGGRPYEEIMRVAEREHCDAIFMASKARST 120

Query: 121 LDKLMLGSETQKVLTYSKIPVLVFK 145
           L +L++GS+TQK+L  SK+PVLVF+
Sbjct: 121 LGRLLMGSQTQKLLARSKVPVLVFR 145


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.134    0.374 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 376,915
Number of extensions: 13036
Number of successful extensions: 65
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 3
Length of query: 145
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 68
Effective length of database: 1,255,275
Effective search space: 85358700
Effective search space used: 85358700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)