BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0231.p
         (236 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311803|ref|YP_003775895.1| universal stress protein [Herba...   116   2e-27

>gi|300311803|ref|YP_003775895.1| universal stress protein
           [Herbaspirillum seropedicae SmR1]
          Length = 274

 Score =  116 bits (291), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/230 (32%), Positives = 122/230 (53%), Gaps = 7/230 (3%)

Query: 9   LPGAAPLPAEEQERREKKHLDMTISLERFKVLAQEFGIARIQTLRVDDDAAAALSNHGNT 68
           + GAA + A+    R++       +LE F  +A   G+   +   VDDDA   L+     
Sbjct: 48  MEGAAYIAAQMDGFRDRA----LAALENFDKIANSVGVPSCEKRFVDDDAEGGLALQARY 103

Query: 69  ADLIVLGKSELHGIDDRKDSDFIEFVALNAAAPVLAI---SEKPFSWRHALIAWNGSSAA 125
           ADL+V+ +++L   DD   +D  E+V LN+  PVL I    E     ++AL+AW+GS  +
Sbjct: 104 ADLVVVSQADLDDADDSFLTDLPEYVMLNSPRPVLIIPSAGEFKHVGKNALVAWDGSMES 163

Query: 126 ARAVRNAIPLLQDVGAISAVIFGDGIVPGTNASASEDELKQCLSSLDKPIDILHRPAATD 185
            RAV  A+PLL+    ++ VIF      GT+      ++   L+     +++       D
Sbjct: 164 TRAVTAALPLLRQADNVTVVIFNSDKRLGTHGEQPGADIALYLARHGVTVEVAQEQTPLD 223

Query: 186 VGHALLALAAELDADLIVMGCVAHPRWRGVLLGGTTGVVIAESPVALLLS 235
           +G+ALL+LAA+  +DL+VMG   H R+R VLLGG T  ++    + +L++
Sbjct: 224 IGNALLSLAADKGSDLLVMGGYGHTRFREVLLGGVTLTILKTMTLPVLMA 273


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.134    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 683,230
Number of extensions: 26247
Number of successful extensions: 89
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 88
Number of HSP's successfully gapped: 1
Length of query: 236
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 154
Effective length of database: 1,231,600
Effective search space: 189666400
Effective search space used: 189666400
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)