BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0229.p
         (145 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313176|ref|YP_003777268.1| universal stress protein [Herba...   140   3e-35
gi|300311715|ref|YP_003775807.1| universal stress protein [Herba...   128   2e-31
gi|300311605|ref|YP_003775697.1| universal stress protein [Herba...   118   2e-28

>gi|300313176|ref|YP_003777268.1| universal stress protein
           [Herbaspirillum seropedicae SmR1]
          Length = 145

 Score =  140 bits (354), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 65/145 (44%), Positives = 97/145 (66%)

Query: 1   MFKKILVPTDGSDLSNRAVRAAIEFAKDHGSAVVGLSVAQTHPYESFTLISRREDFSLLS 60
           MFK ILVPTDGS+ S++A+  A+++AK+ G+ ++G++VA+ +P+      S   D +L  
Sbjct: 1   MFKTILVPTDGSERSDKAIATAVDYAKNSGARLIGITVAEPYPFSPLAESSMAIDPALYE 60

Query: 61  ESLRQRARDYVHIIEDLAEKACIPCQVHTVDSPQPWKAIVDAAAEHACDCIFMASHGRGG 120
           E+++  A+ ++  I D A  A +PCQ   V S  P + I+ AA  HACD IFMASHGR G
Sbjct: 61  ENVKTLAQQHIKKITDAATAAGVPCQTEIVMSFNPDEEIIKAAQLHACDAIFMASHGRSG 120

Query: 121 LNRILLGNQTHKVLVHGNVPVIIFR 145
           L+RI LG++T KVL H  +PV++ R
Sbjct: 121 LSRIFLGSKTQKVLTHSTIPVLVLR 145


>gi|300311715|ref|YP_003775807.1| universal stress protein
           [Herbaspirillum seropedicae SmR1]
          Length = 157

 Score =  128 bits (322), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 65/145 (44%), Positives = 96/145 (66%), Gaps = 1/145 (0%)

Query: 1   MFKKILVPTDGSDLSNRAVRAAIEFAKDHGSAVVGLSVAQTHPYESFTLISRREDFSLLS 60
           +FKKILVPTDGSD S RAV+AA++FAK+ GS++VGLSVA+    +   +     ++  + 
Sbjct: 14  IFKKILVPTDGSDASERAVQAAVQFAKESGSSLVGLSVAE-DIVQWAVIDGTAINYLQVE 72

Query: 61  ESLRQRARDYVHIIEDLAEKACIPCQVHTVDSPQPWKAIVDAAAEHACDCIFMASHGRGG 120
             + + A+  V  +  LA+ A +PC+  TV +  P++ I+  A+   CD IFMASHGR G
Sbjct: 73  NEILENAKSNVARLAALAKSADVPCETFTVKAVHPYEEILAHASHQHCDAIFMASHGRKG 132

Query: 121 LNRILLGNQTHKVLVHGNVPVIIFR 145
           L R +LG+QT KVL +  +PV++FR
Sbjct: 133 LERFILGSQTQKVLANATIPVLVFR 157


>gi|300311605|ref|YP_003775697.1| universal stress protein
           [Herbaspirillum seropedicae SmR1]
          Length = 145

 Score =  118 bits (295), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 61/145 (42%), Positives = 85/145 (58%)

Query: 1   MFKKILVPTDGSDLSNRAVRAAIEFAKDHGSAVVGLSVAQTHPYESFTLISRREDFSLLS 60
           MFK IL+ TDGS L N +V+AAI  AK  GS++VGLSV+      S   +S   D +   
Sbjct: 1   MFKNILLATDGSRLCNESVKAAIALAKSCGSSLVGLSVSGNLRALSIPEVSVGVDVARAG 60

Query: 61  ESLRQRARDYVHIIEDLAEKACIPCQVHTVDSPQPWKAIVDAAAEHACDCIFMASHGRGG 120
           E+ R RA   V +I ++A +  +PC V      +P++ I+  A    CD IFMAS  R  
Sbjct: 61  EAGRARALASVEMITEMARQEGVPCSVQVAQGGRPYEEIMRVAEREHCDAIFMASKARST 120

Query: 121 LNRILLGNQTHKVLVHGNVPVIIFR 145
           L R+L+G+QT K+L    VPV++FR
Sbjct: 121 LGRLLMGSQTQKLLARSKVPVLVFR 145


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.136    0.411 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 374,410
Number of extensions: 11440
Number of successful extensions: 48
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 47
Number of HSP's successfully gapped: 3
Length of query: 145
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 68
Effective length of database: 1,255,275
Effective search space: 85358700
Effective search space used: 85358700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 126 (53.1 bits)