BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0227.p
         (331 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300312669|ref|YP_003776761.1| Mg(2+) transport ATPase [Herbas...   301   3e-83
gi|300311691|ref|YP_003775783.1| cation transport ATPase [Herbas...   138   6e-34

>gi|300312669|ref|YP_003776761.1| Mg(2+) transport ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 920

 Score =  301 bits (772), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 166/332 (50%), Positives = 215/332 (64%), Gaps = 23/332 (6%)

Query: 13  LAQQSSSLQGLTAEEAGKRRRQYGANVIAAGPSLQGWRQFLKLFASPLSLLLLALTTVNL 72
           L +  S   GLT  EA   R   G N +     L  +      + +P +LLL  L  V+ 
Sbjct: 60  LQRLHSRPDGLTESEADAIRAHSGPNEVEHEKPLTWYVHLWHCYKNPFNLLLTLLAAVSF 119

Query: 73  LIGETWSGIMIGVMVVLSSLLSFVQEHRADKAAQQLRSMVATTATVQRAGQ--------- 123
              +  + I+IG MVV+S+LL FVQE R++ AA +L++MV+ TATV R  Q         
Sbjct: 120 YTEDMKAAIVIGTMVVVSTLLRFVQEARSNTAADKLKAMVSNTATVMRHDQVEEIAAEAQ 179

Query: 124 ------------GHVELPLAELVPGDIIFLSAGDIAPADVRILSARMLFISQAALTGESL 171
                         VE+P+ +LVPGDI+ LSAGD+ PAD+R+L+A+ LF+SQAA+TGESL
Sbjct: 180 RYFDVTLHPKGARRVEVPIRQLVPGDIVLLSAGDMIPADLRLLAAKDLFVSQAAMTGESL 239

Query: 172 PIEKTPVAVSNAANGSLTDLANLAFMGTNVVSGTGAALVMATGERTAFGHIAADLVKT-R 230
           P+EK  V  SN    S  +L NL FMGTNVVSG+   +V+ TG+RT FG +A  +  T R
Sbjct: 240 PVEKF-VTPSNLNTSSPLELDNLCFMGTNVVSGSATGVVLTTGKRTYFGALAERVTATDR 298

Query: 231 ETTSFDRGVDRYIRLIIRIMLVMAPLVFLINGLTKGDWLEALLFAVAVAVGLTPEMLPMI 290
             T+F  GV++   L+IR MLVM P+VF ING TKGDW+EA LF ++VAVGLTPEMLPMI
Sbjct: 299 TPTAFQAGVNKVSWLLIRFMLVMTPVVFFINGFTKGDWVEAFLFGLSVAVGLTPEMLPMI 358

Query: 291 ITINLAKGALAMSEKKVIVKRLNAIQNFGAMD 322
           +T  LAKGA+A+S KKVIVKRL+AIQNFGAMD
Sbjct: 359 VTSTLAKGAVALSRKKVIVKRLDAIQNFGAMD 390


>gi|300311691|ref|YP_003775783.1| cation transport ATPase
           [Herbaspirillum seropedicae SmR1]
          Length = 853

 Score =  138 bits (348), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 104/305 (34%), Positives = 167/305 (54%), Gaps = 6/305 (1%)

Query: 21  QGLTAEEAGKRRRQYGANVIAAGPSLQGWRQFLKLFASPLSLLLLALTTVNLLIGETWSG 80
            GL+  E  +   + G NV+ +     G R  +K+   P+ +LLL+   + L +GE   G
Sbjct: 10  HGLSHSEVTRLLAEDGPNVLHSDQRRMG-RVLMKVIREPMFMLLLSAAAIYLTLGELREG 68

Query: 81  IMIGVMVVLSSLLSFVQEHRADKAAQQLRSMVATTATVQRAGQGHVELPLAELVPGDIIF 140
           +++  MV L+  L+  Q  + ++A   LR + + TA V R G+  + +  AELV GD+I 
Sbjct: 69  LLLLFMVALTVGLTLYQGGKTERALAALRVLNSPTARVIRDGRT-MRIAAAELVRGDLIL 127

Query: 141 LSAGDIAPADVRILSARMLFISQAALTGESLPIEKTPVAVS---NAANGSLTDLANLAFM 197
           L  G   PAD  +L A  L + ++ LTGE+ P+EK   +     +A     TD A L   
Sbjct: 128 LEEGARVPADAGVLEASNLQLDESLLTGEACPVEKFAPSTKPEPHALPSGQTDSATLVRS 187

Query: 198 GTNVVSGTGAALVMATGERTAFGHIAADLVK-TRETTSFDRGVDRYIRLIIRIMLVMAPL 256
           GT VV G+G A V ATG RT  G I++ L +   E +   R + R + ++    L+++ L
Sbjct: 188 GTLVVRGSGIAKVTATGARTELGKISSLLHELVEEPSPMQRHIARIVTVLAVTGLMLSAL 247

Query: 257 VFLINGLTKGDWLEALLFAVAVAVGLTPEMLPMIITINLAKGALAMSEKKVIVKRLNAIQ 316
           + ++ G + G W EALL  +A+++ L PE LP+I+TI  A GA  M+   V+ +RL+AI+
Sbjct: 248 LVVLEGYSHGRWTEALLMGIALSMSLLPEELPIILTIFPAIGAWRMARANVLTRRLSAIE 307

Query: 317 NFGAM 321
             G++
Sbjct: 308 TLGSI 312


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.133    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 819,121
Number of extensions: 28694
Number of successful extensions: 131
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 128
Number of HSP's successfully gapped: 4
Length of query: 331
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 245
Effective length of database: 1,212,660
Effective search space: 297101700
Effective search space used: 297101700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)