BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0226.p (514 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312669|ref|YP_003776761.1| Mg(2+) transport ATPase [Herbas... 535 e-153 gi|300311691|ref|YP_003775783.1| cation transport ATPase [Herbas... 136 4e-33 gi|300310937|ref|YP_003775029.1| heavy metal translocating P-typ... 76 8e-15 gi|300310933|ref|YP_003775025.1| metal-transporting P-type ATPas... 61 3e-10 >gi|300312669|ref|YP_003776761.1| Mg(2+) transport ATPase [Herbaspirillum seropedicae SmR1] Length = 920 Score = 535 bits (1379), Expect = e-153, Method: Compositional matrix adjust. Identities = 264/512 (51%), Positives = 360/512 (70%), Gaps = 13/512 (2%) Query: 5 KVTRYAYLNSFFQTGLKNLLDMAILNYVDPGKKSATPAETKAETEKEFRKIDELPFDFER 64 +V +YAYLNS++QTGLKNLLD+A+L + + ++ + + +RK+DE+PFDF+R Sbjct: 420 EVLQYAYLNSYYQTGLKNLLDVAVLEHAELQREMSIASA--------YRKVDEIPFDFQR 471 Query: 65 RRMSVIVEQADRTRLLICKGAPEEILAVCTHAEHAGAPMPLAGHHGAALSKTVDDLNEDG 124 RRMSV+V + + LICKGA EEI++VC+ A G +P+ + T LN +G Sbjct: 472 RRMSVVVSEREDHHELICKGAVEEIVSVCSRARVNGEVVPMTPALLEEIRATTGSLNAEG 531 Query: 125 FRVIAVAYKELPAATAEVPALGNADESALTLVGYIAFLDPPKDSAGEAIAGLHACGVTVK 184 RV+ VA K+LP T EV +L ADES L L+GYIAFLDPPK+S A+A L A GV VK Sbjct: 532 LRVVGVAAKDLPP-TKEVYSL--ADESDLVLIGYIAFLDPPKESTAPALAALRAHGVKVK 588 Query: 185 VLSGDNGAVVRNVCRHVGLSGEQAVLGSDIDTLSDEALGELAEHSNIFAKLNPQQKARII 244 +L+GDN V +CR VGL + +LGS ++ +SD L E E +FAKL+P K RI+ Sbjct: 589 ILTGDNELVTAKICREVGLEVKGMLLGSYVEKMSDAELSEAVETVTVFAKLSPAHKERIV 648 Query: 245 RCLQARRHVVGYLGDGINDGAALKAADVGISVDSAVDIAKESADIILMRKSLIVLKDGVL 304 R L R HVVG++GDGIND AL+AAD+GISVD+AVDIAKE+AD+IL+ KSL+VL++GVL Sbjct: 649 RVLHDRGHVVGFMGDGINDAPALRAADIGISVDTAVDIAKEAADLILLEKSLMVLEEGVL 708 Query: 305 EGRRVFGNITKYIKMSSSSAFGNMLSVLGASAMLPFLPMAPVQILLNNLLYDFSQTTIAT 364 EGR+ F N+ KYIKM++SS FGN+ SVL ASA LPFLPM P+ +L+ NLLYD SQ +I Sbjct: 709 EGRKTFANMLKYIKMTASSNFGNVFSVLIASAFLPFLPMLPLHLLVQNLLYDVSQISIPF 768 Query: 365 DHVDAEYLKQPRRWEILDIGRFMMVLGPVSSLFDYMTFGVLWYFFGAAG--QPLLFQSGW 422 D+VD E+L++P+RW+ DIGRFM+ GP+SS+FD TF ++W+ FGA+ LFQSGW Sbjct: 769 DNVDKEFLEKPQRWDAGDIGRFMVFFGPISSIFDITTFALMWFIFGASSPEHQTLFQSGW 828 Query: 423 FVESLLSQTLVVHVIRTGKIPFVQSKPSLPLLATTAVICVLAFWLPASSIAHTLGLTALP 482 F+E LLSQTL+VH+IRT +IPF QS+ S PL+ T +I + +P + +AH L ALP Sbjct: 829 FIEGLLSQTLIVHMIRTRRIPFFQSRASWPLMGMTLIIMAIGIAIPMTPLAHYFKLEALP 888 Query: 483 LNLNAAILAIVFAYLLMTQLMKSWLIRRFGLK 514 L+ ++ I+ AY ++ Q MK W +R+G + Sbjct: 889 LSYFPWLVGILVAYAVLIQGMKGWYAKRYGWQ 920 >gi|300311691|ref|YP_003775783.1| cation transport ATPase [Herbaspirillum seropedicae SmR1] Length = 853 Score = 136 bits (343), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 115/403 (28%), Positives = 192/403 (47%), Gaps = 71/403 (17%) Query: 33 DPGKKSATPAETKAETEKEFRKIDELPFDFERRRMSVIVEQADRTRLLIC-KGAPEEILA 91 + K+ A PA T+ + E PF R M+++ + D LL+ KGAPE I + Sbjct: 383 ESAKRFAPPALTQL--------LQEYPFTPALRAMTMVWKGDDDAPLLVATKGAPEAIAS 434 Query: 92 VCTHAEHAGAPMPLAGHHGAALSKTVDD---LNEDGFRVIAVA----YKELPAATAEVPA 144 +C G A + + +D L G RVIAVA LPA+ A+ Sbjct: 435 LC-------------GLTPAEVQQMQNDIMHLGSHGLRVIAVAACNWSGALPASQAQF-- 479 Query: 145 LGNADESALTLVGYIAFLDPPKDSAGEAIAGLHACGVTVKVLSGDNGAVVRNVCRHVGLS 204 L +G +A DP + +AI H + V +++GD+ + +N+ R G+S Sbjct: 480 -------GLRYLGLLALADPLRPGVPDAIQRCHQAEIRVIMITGDHPSTAQNIARQAGIS 532 Query: 205 GEQAVLGSDIDTLSDEALGELAEHSNIFAKLNPQQKARIIRCLQARRHVVGYLGDGINDG 264 +Q +LG ++ +++ L +N+ A++ P QK RI+ L+ ++ GDG+ND Sbjct: 533 ADQVLLGDEVQAMAEHELARRLRTTNVCARITPLQKLRIVAALKDDGEIIAMTGDGVNDA 592 Query: 265 AALKAADVGISVDS-AVDIAKESADIILMRKSLIVLKDGVLEGRRVFGNITKYIKMSSSS 323 ALKAA VGI++ + D+A+E+ +IL+ + + +G+L GRR+F + Sbjct: 593 PALKAAHVGIAMGARGTDVAREAGSLILLDDNFASIVEGILMGRRIFSRMR--------- 643 Query: 324 AFGNMLSVL------GASAMLPF-----LPMAPVQILLNNLLYDFSQTTIATDHVDAEYL 372 G M+ VL A+LP L + P+QI L+ D T+A ++ ++Y Sbjct: 644 --GAMIYVLAMHMPIAGMALLPVVFGWPLILYPMQIAFLELIVD-PACTLAFENTGSDYR 700 Query: 373 KQ--PRRW---EILDIGRFMMVL--GPVSSLFDYMTFGVLWYF 408 ++ PRR +LD ++VL G V+ LF + LW+ Sbjct: 701 ERQAPRRHGAAPLLDARIIILVLVQGSVALLFAVSAY--LWFL 741 >gi|300310937|ref|YP_003775029.1| heavy metal translocating P-type ATPase [Herbaspirillum seropedicae SmR1] Length = 744 Score = 75.9 bits (185), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 51/174 (29%), Positives = 81/174 (46%), Gaps = 26/174 (14%) Query: 145 LGNADESALTLVGYIAFLDPPKDSAGEAIAGLHACGVTVKVLSGDNGAVVRNVCRHVGLS 204 L ++S + ++G +AF D K A AIA LH GV +LSGDN + V +G+ Sbjct: 541 LARRNDSGVEVLGLLAFGDQIKPGAQAAIATLHRMGVRSAMLSGDNLGAAQQVASELGIQ 600 Query: 205 GEQAVLGSDIDTLSDEALGELAEHSNIFAKLNPQQKARIIRCL-QARRHVVGYLGDGIND 263 + A++ P KA + L Q VV +GDG+ND Sbjct: 601 -------------------------EVRAEVLPADKAEAVTALRQGGAQVVAMVGDGVND 635 Query: 264 GAALKAADVGISVDSAVDIAKESADIILMRKSLIVLKDGVLEGRRVFGNITKYI 317 AL AADVG+++ + D+A ++A + LM ++ D + RR + I + + Sbjct: 636 APALAAADVGMAMSTGTDVAMQAAGVTLMHGDPGLVADAIDISRRTYAKIRQNL 689 >gi|300310933|ref|YP_003775025.1| metal-transporting P-type ATPase transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 778 Score = 60.8 bits (146), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 76/165 (46%), Gaps = 28/165 (16%) Query: 159 IAFLDPPKDSAGEAIAGLHACGVTVKVLSGDNGAVVRNVCRHVGLSGEQAVLGSDIDTLS 218 +A D + S+ +A+A L A GV V +L+GDN + + G+S D Sbjct: 589 VAVADTVRPSSRQAVAELRALGVEVIMLTGDNSHTAQAIAAQTGIS----------DARG 638 Query: 219 DEALGELAEHSNIFAKLNPQQKARIIRCLQARRHV--VGYLGDGINDGAALKAADVGISV 276 D+ P+ K + I L R V VG +GDGIND AL AD+G ++ Sbjct: 639 DQL---------------PEDKLKAIEELSQRHGVRGVGMVGDGINDAPALARADIGFAM 683 Query: 277 DSA-VDIAKESADIILMRKSLIVLKDGVLEGRRVFGNITKYIKMS 320 +A D A E+AD+ LM L + D + R+ + + I ++ Sbjct: 684 GAAGTDTALETADVALMDDDLRKIPDFIRLSRKAHAVLVQNISIA 728 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.137 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,489,118 Number of extensions: 61718 Number of successful extensions: 234 Number of sequences better than 1.0e-08: 5 Number of HSP's gapped: 228 Number of HSP's successfully gapped: 5 Length of query: 514 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 425 Effective length of database: 1,198,455 Effective search space: 509343375 Effective search space used: 509343375 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 133 (55.8 bits)