BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0224.p
         (115 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311156|ref|YP_003775248.1| type I antifreeze protein:HlyD ...   120   4e-29

>gi|300311156|ref|YP_003775248.1| type I antifreeze protein:HlyD
           family secretion protein [Herbaspirillum seropedicae
           SmR1]
          Length = 360

 Score =  120 bits (300), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 65/88 (73%), Positives = 79/88 (89%)

Query: 1   LQAQRDEAVAQKQQVVAAVASAQAQVAVRESDRQAALAQVAQRESELDAAQRRLVRSETL 60
           LQAQRDEA+A +QQ ++AVASA+AQVAVR+SD QAALAQ  QRESELDAA+RRL RSE L
Sbjct: 88  LQAQRDEALAHQQQSLSAVASAEAQVAVRQSDYQAALAQTVQRESELDAARRRLARSEVL 147

Query: 61  VQEGASSIQEVDDDRTRVRTTQAALSAA 88
           V+EGASS+QEVDDDR RVR+ +AA++A+
Sbjct: 148 VREGASSVQEVDDDRARVRSMEAAVTAS 175


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.313    0.119    0.314 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 163,364
Number of extensions: 3332
Number of successful extensions: 58
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 2
Length of query: 115
Length of database: 1,619,870
Length adjustment: 73
Effective length of query: 42
Effective length of database: 1,274,215
Effective search space: 53517030
Effective search space used: 53517030
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 124 (52.4 bits)