BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0223.p
         (161 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311156|ref|YP_003775248.1| type I antifreeze protein:HlyD ...   256   5e-70
gi|300311270|ref|YP_003775362.1| HlyD family membrane-fusion pro...   182   8e-48

>gi|300311156|ref|YP_003775248.1| type I antifreeze protein:HlyD
           family secretion protein [Herbaspirillum seropedicae
           SmR1]
          Length = 360

 Score =  256 bits (655), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 126/161 (78%), Positives = 137/161 (85%)

Query: 1   VTAATATVARIDADIVDSALTAPRGGRVQYRVAQPGEVLGSGGKVLNLVDLSDVYMTFFV 60
           VTAA ATV RI  DI DS L APR GRVQYR+AQPGEVLG GGKVLNLVDLSDVYMTFF+
Sbjct: 200 VTAAQATVQRIKVDIDDSTLAAPRAGRVQYRIAQPGEVLGGGGKVLNLVDLSDVYMTFFL 259

Query: 61  PEAAAGKLAIGSDVRLILDAAPQYVIPARVSYVASTAQFTPKTVETASERQKLMFRVKAQ 120
           PE   GKLA+GS+ R+ILDAAPQYVIPAR+S+VASTAQFTPKTVETASERQKLMFRVKAQ
Sbjct: 260 PEVVVGKLALGSEARIILDAAPQYVIPARISFVASTAQFTPKTVETASERQKLMFRVKAQ 319

Query: 121 IDRDLLVKHLHLVKTGLPGVAWVKLAGQADWPADLAVKVPK 161
           ID  LL +HL LVKTGLPGVAWV+      WPA LAV+VP+
Sbjct: 320 IDPALLQQHLTLVKTGLPGVAWVRTDQNQPWPAQLAVQVPQ 360


>gi|300311270|ref|YP_003775362.1| HlyD family membrane-fusion
           protein [Herbaspirillum seropedicae SmR1]
          Length = 358

 Score =  182 bits (463), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 89/158 (56%), Positives = 116/158 (73%), Gaps = 6/158 (3%)

Query: 1   VTAATATVARIDADIVDSALTAPRGGRVQYRVAQPGEVLGSGGKVLNLVDLSDVYMTFFV 60
           + AA A  ARI+AD+ +SA+ APR G +QYR+AQ GEV+  G K+LNL+DLSD++M FF+
Sbjct: 197 LEAAQAATARIEADLEESAIRAPRDGHIQYRLAQAGEVVSEGSKLLNLIDLSDLHMHFFL 256

Query: 61  PEAAAGKLAIGSDVRLILDAAPQYVIPARVSYVASTAQFTPKTVETASERQKLMFRVKAQ 120
           P   AGK+ +G +VR++LDAAP   +PAR++YV+  AQFTPK VETA+ERQKLMFRVKAQ
Sbjct: 257 PAELAGKVRLGQEVRVVLDAAPTDALPARITYVSRQAQFTPKAVETANERQKLMFRVKAQ 316

Query: 121 I---DRDLLVKHLHLVKTGLPGVAWVKLAGQADWPADL 155
           +    R  +  HL   K G+PGVAW+K A Q  WP  L
Sbjct: 317 LTPSSRGSIAPHL---KAGMPGVAWIKTAEQLPWPKTL 351


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.134    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 515,195
Number of extensions: 20569
Number of successful extensions: 75
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 2
Length of query: 161
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 83
Effective length of database: 1,250,540
Effective search space: 103794820
Effective search space used: 103794820
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)