BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0221.p (352 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311157|ref|YP_003775249.1| multidrug ABC transporter ATPas... 565 e-162 gi|300311269|ref|YP_003775361.1| multidrug ABC transporter ATPas... 379 e-106 gi|300311158|ref|YP_003775250.1| multidrug ABC transporter perme... 59 7e-10 gi|300311268|ref|YP_003775360.1| multidrug ABC transporter perme... 58 1e-09 >gi|300311157|ref|YP_003775249.1| multidrug ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 923 Score = 565 bits (1457), Expect = e-162, Method: Compositional matrix adjust. Identities = 276/352 (78%), Positives = 313/352 (88%) Query: 1 VRATLALLGTAILLFIIGYGISLDVENLSYAVLDRDQTALSQSYALNLSGSRYFIEKAAL 60 VRATLALLGTAIL+FIIGYGI+LDVENLSYAVLDRDQT LSQ+YALNLSGSRYFIEK + Sbjct: 572 VRATLALLGTAILMFIIGYGINLDVENLSYAVLDRDQTGLSQNYALNLSGSRYFIEKPPI 631 Query: 61 SDYNDIDRRMRNGELALAIEIPPGFARDLERGAPAQIGAWIDGSMPMRAETVRGYVLAMH 120 SDY ++DRRMR+G+++LAIEIPPGFARD+ RG ++GAW+DG+MP RAETVRGYV MH Sbjct: 632 SDYQELDRRMRSGDISLAIEIPPGFARDIARGHTVEVGAWVDGAMPTRAETVRGYVQGMH 691 Query: 121 QLWLVDMATHRLGMRPVATSSVETRYRYNPDVKSLPAMVPAVIPMLLMMIPAMLAALSVV 180 QLWL DMATHRLG + +ETRYRYNPDVKSLPAMVPA+IP+LLMMIPAML ALSVV Sbjct: 692 QLWLADMATHRLGQSLAMPARIETRYRYNPDVKSLPAMVPAIIPLLLMMIPAMLTALSVV 751 Query: 181 REKELGSIINLYVTPVTRAEFLLGKQVPYVLLGMLNFLLLTLLAVSVFGVPIKGDFASLA 240 REKELGSI+NLYVTPV+R EFLLGKQ+PY+LLGMLNF +LTLLAV+VFGVP+KG +L Sbjct: 752 REKELGSILNLYVTPVSRTEFLLGKQLPYLLLGMLNFAMLTLLAVTVFGVPVKGSLLTLT 811 Query: 241 LTAFVFIICSTGFGLLASTFTRSQIAAIFVTMIGTIIPCVQFAGLLNPVSSLEGVGAWIG 300 L A VF+ICSTGFGLLASTFT SQIAA+FVTMIGTIIPCVQFAGLLNPVSSLEG+GA IG Sbjct: 812 LAALVFVICSTGFGLLASTFTNSQIAALFVTMIGTIIPCVQFAGLLNPVSSLEGMGALIG 871 Query: 301 RLYPASHFLTISRGIFNKALDLSGLMPSFWSLLAAVPVILGASVLLLRKQER 352 ++YPA+HFLTISRG+F+KAL L L SFW L+ A PVILG SVLLL+KQER Sbjct: 872 QVYPATHFLTISRGVFSKALALDDLASSFWPLVVAAPVILGLSVLLLKKQER 923 >gi|300311269|ref|YP_003775361.1| multidrug ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 913 Score = 379 bits (973), Expect = e-106, Method: Compositional matrix adjust. Identities = 199/352 (56%), Positives = 265/352 (75%), Gaps = 2/352 (0%) Query: 1 VRATLALLGTAILLFIIGYGISLDVENLSYAVLDRDQTALSQSYALNLSGSRYFIEKAAL 60 VRAT+ALLG+ +L+F+IGYGIS DV L YAVLD+DQ++ S+ YA L S YF E+A L Sbjct: 562 VRATMALLGSLLLMFVIGYGISTDVNGLPYAVLDQDQSSASRDYAAALRASPYFQERAPL 621 Query: 61 SDYNDIDRRMRNGELALAIEIPPGFARDLERGAPAQIGAWIDGSMPMRAETVRGYVLAMH 120 +D+RMRNGEL LAIEIP GF R L G +IGAWI+G+MP RAETV+ YV MH Sbjct: 622 QGPAQLDKRMRNGELTLAIEIPSGFGRRLAAGRQVEIGAWINGAMPSRAETVQAYVQGMH 681 Query: 121 QLWLVDMATHRLGMRPVATS-SVETRYRYNPDVKSLPAMVPAVIPMLLMMIPAMLAALSV 179 Q WL + RL RP + ++TR RYN D++SLPA++PAVIP+LL+ +PAML AL+V Sbjct: 682 QHWL-EQRQQRLQGRPQTPALEIQTRLRYNADLRSLPAILPAVIPLLLLTLPAMLTALAV 740 Query: 180 VREKELGSIINLYVTPVTRAEFLLGKQVPYVLLGMLNFLLLTLLAVSVFGVPIKGDFASL 239 VREKELG+IIN YVTPVTR EFL GKQ+PY+ LGM NFLL+++ AV++ +P+KG +A+L Sbjct: 741 VREKELGAIINFYVTPVTRLEFLCGKQLPYIALGMFNFLLMSMAAVTLLELPVKGSYAAL 800 Query: 240 ALTAFVFIICSTGFGLLASTFTRSQIAAIFVTMIGTIIPCVQFAGLLNPVSSLEGVGAWI 299 AL V+++ +TG GL+AS TRSQIAA+F ++GT++P QFAG+ PVS+LEG+G + Sbjct: 801 ALATLVYLVIATGMGLVASALTRSQIAAMFAALLGTLVPATQFAGMTTPVSALEGMGRLV 860 Query: 300 GRLYPASHFLTISRGIFNKALDLSGLMPSFWSLLAAVPVILGASVLLLRKQE 351 G ++PA+H ISRG++ KAL L+ + S LLA +PV++G +VL+LRKQE Sbjct: 861 GDIHPATHMFLISRGVYVKALGLADVATSLALLLATLPVVMGLAVLMLRKQE 912 >gi|300311158|ref|YP_003775250.1| multidrug ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 375 Score = 58.5 bits (140), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 86/367 (23%), Positives = 158/367 (43%), Gaps = 28/367 (7%) Query: 1 VRATLALLGTAILLFIIGYGISLDV--------ENLSYA---VLDRDQTALSQSYALNLS 49 ++ +LL +L +I Y SL + E+L +A ++D D + LS A + Sbjct: 13 IKELWSLLRDPAMLVLIAYTFSLSIYVAATAMPESLHHAAIAIVDNDSSPLSARIAASFY 72 Query: 50 GSRYFIEKAALSDYNDIDRRMRNGELALAIEIPPGFARD-LERGAPAQIGAWIDGSMPMR 108 + + + L D + +G+ ++IP F RD L APA + +D + + Sbjct: 73 PPHFKVAR--LVTARQADAGLDDGDYTFVLDIPADFQRDVLAARAPA-VQLNVDATRMSQ 129 Query: 109 AETVRGYVLAMHQLWLVDMATHRLGMRPVATSSVETRYRYNPDVK-----SLPAMVPAVI 163 A T Y+ M + + G A ++ R R+NP+++ SL ++ V Sbjct: 130 AFTGNSYIQQMVTNEVAQFVQRQEG-GASAPVNLALRMRFNPNLEQSWFGSLMEIINNVT 188 Query: 164 PMLLMMIPAMLAALSVVREKELGSIINLYVTPVTRAEFLLGKQVPY-VLLGMLNFLLLTL 222 M+ +L +++RE+E G+I +L V PVT AE +L K V++ + L L Sbjct: 189 -----MLSIILTGAALIREREHGTIEHLLVMPVTPAEIMLAKVWSMGVVVALAALASLLL 243 Query: 223 LAVSVFGVPIKGDFASLALTAFVFIICSTGFGLLASTFTRSQIAAIFVTMIGTIIPCVQF 282 + VPI+G A L + + +T G+ +T RS + + + ++P Sbjct: 244 IVRGALHVPIEGSVALFMLVTCLHLFATTSMGIFMATLARS-MPQFGMLTVLVLLPLQLL 302 Query: 283 AGLLNPVSSLEGVGAWIGRLYPASHFLTISRGIFNKALDLSGLMPSFWSLLAAVPVILGA 342 +G P S+ + I P +HF+ + I + L + P ++ V+ A Sbjct: 303 SGGSTPRESMPVLVQDIMLAAPTTHFVAAGQAILYRGAGLEVIWPQLLAIFGIGAVLFMA 362 Query: 343 SVLLLRK 349 ++ RK Sbjct: 363 ALGRFRK 369 >gi|300311268|ref|YP_003775360.1| multidrug ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 375 Score = 57.8 bits (138), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 73/325 (22%), Positives = 145/325 (44%), Gaps = 17/325 (5%) Query: 31 AVLDRDQTALSQSYALNLSGSRYFIEKAALSDYNDIDRRMRNGELALAIEIPPGFARDLE 90 A++D D + LSQ A ++ + ++D + G + P G L+ Sbjct: 54 AIVDEDDSPLSQRLAAAFMAPQFSPPQRI--SVAEMDAGLDAGRYVFVLHFPAGLQSKLQ 111 Query: 91 RGAPAQIGAWIDGSMPMRAETVRGYVLAMHQLWLVDMATHRLGMRPVATSSVETRYRYNP 150 G PA++ +D + +A + YV + QL + R P +++ R R+NP Sbjct: 112 TGKPAEVQLNVDATRMDQAYSGSAYVEQILQLEIRRFLQKRQD-EPREAATLALRARFNP 170 Query: 151 DV-KSLPAMVPAVIPMLLMMIPAMLAALSVVREKELGSIINLYVTPVTRAEFLLGKQVPY 209 + K+ + V +I + M+ +LA +++RE+E G+I +L V PV+ + + K Sbjct: 171 ALEKTWFSSVLQIIDNI-TMLAIILAGAALIREREHGTIEHLLVMPVSPVQIMGAK---- 225 Query: 210 VLLGMLNFLL----LTLLAV--SVFGVPIKGDFASLALTAFVFIICSTGFGLLASTFTRS 263 +L M +L L+L V + VPI+G A + + +T G+ +T RS Sbjct: 226 -VLAMGGVVLVAATLSLHGVVRGLLDVPIEGSVGLFLFGAALSLFANTALGISLATVARS 284 Query: 264 QIAAIFVTMIGTIIPCVQFAGLLNPVSSLEGVGAWIGRLYPASHFLTISRGIFNKALDLS 323 + + ++ ++P + +G P S+ + ++ P++H + + G+ + L Sbjct: 285 -MPQFGLLLMLVLLPLILLSGGATPRESMPVLIQYLMLAAPSTHLVRLGEGVLYRGAGLE 343 Query: 324 GLMPSFWSLLAAVPVILGASVLLLR 348 + P +L ++L S+ LR Sbjct: 344 MVWPQLLALFLIGNILLWVSLRRLR 368 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.326 0.140 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 966,821 Number of extensions: 38636 Number of successful extensions: 182 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 180 Number of HSP's successfully gapped: 4 Length of query: 352 Length of database: 1,619,870 Length adjustment: 86 Effective length of query: 266 Effective length of database: 1,212,660 Effective search space: 322567560 Effective search space used: 322567560 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 131 (55.1 bits)