BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0220.p
         (147 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311158|ref|YP_003775250.1| multidrug ABC transporter perme...   178   1e-46
gi|300311268|ref|YP_003775360.1| multidrug ABC transporter perme...   121   3e-29

>gi|300311158|ref|YP_003775250.1| multidrug ABC transporter permease
           [Herbaspirillum seropedicae SmR1]
          Length = 375

 Score =  178 bits (452), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 91/138 (65%), Positives = 104/138 (75%), Gaps = 3/138 (2%)

Query: 6   SWRAVANITRLGVKELWSLARDPAMLVLIAYTFTVSIYVAATAMPDSLHNAAIAIVDEDG 65
           SW   ANI RLG+KELWSL RDPAMLVLIAYTF++SIYVAATAMP+SLH+AAIAIVD D 
Sbjct: 4   SW---ANIYRLGIKELWSLLRDPAMLVLIAYTFSLSIYVAATAMPESLHHAAIAIVDNDS 60

Query: 66  SPLSARIAASFYPPYFKTPDMISLSRMDVGMDNGDYTFVLDIPPGFQRDVLAGRSPGGFA 125
           SPLSARIAASFYPP+FK   +++  + D G+D+GDYTFVLDIP  FQRDVLA R+P    
Sbjct: 61  SPLSARIAASFYPPHFKVARLVTARQADAGLDDGDYTFVLDIPADFQRDVLAARAPAVQL 120

Query: 126 GRTAERGRHAHEPGIYRQ 143
              A R   A     Y Q
Sbjct: 121 NVDATRMSQAFTGNSYIQ 138


>gi|300311268|ref|YP_003775360.1| multidrug ABC transporter permease
           [Herbaspirillum seropedicae SmR1]
          Length = 375

 Score =  121 bits (303), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 59/112 (52%), Positives = 77/112 (68%)

Query: 8   RAVANITRLGVKELWSLARDPAMLVLIAYTFTVSIYVAATAMPDSLHNAAIAIVDEDGSP 67
           + +AN+ +L +KELWSL RD  ML LI  +FT  +Y AA+A+PD+L +AAIAIVDED SP
Sbjct: 3   QGLANLWQLTLKELWSLWRDRVMLCLIVLSFTGMVYSAASAIPDTLSHAAIAIVDEDDSP 62

Query: 68  LSARIAASFYPPYFKTPDMISLSRMDVGMDNGDYTFVLDIPPGFQRDVLAGR 119
           LS R+AA+F  P F  P  IS++ MD G+D G Y FVL  P G Q  +  G+
Sbjct: 63  LSQRLAAAFMAPQFSPPQRISVAEMDAGLDAGRYVFVLHFPAGLQSKLQTGK 114


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.137    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 539,291
Number of extensions: 22366
Number of successful extensions: 63
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 2
Length of query: 147
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 70
Effective length of database: 1,255,275
Effective search space: 87869250
Effective search space used: 87869250
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 126 (53.1 bits)