BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0219.p
         (249 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311158|ref|YP_003775250.1| multidrug ABC transporter perme...   356   1e-99
gi|300311268|ref|YP_003775360.1| multidrug ABC transporter perme...   265   2e-72

>gi|300311158|ref|YP_003775250.1| multidrug ABC transporter permease
           [Herbaspirillum seropedicae SmR1]
          Length = 375

 Score =  356 bits (913), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 198/249 (79%), Positives = 219/249 (87%)

Query: 1   MSQAFTGNSYILEIINTEVAEFLQRYRGIAAAPAELVLHSRFNPNLERAWFGALMEIINN 60
           MSQAFTGNSYI +++  EVA+F+QR  G A+AP  L L  RFNPNLE++WFG+LMEIINN
Sbjct: 127 MSQAFTGNSYIQQMVTNEVAQFVQRQEGGASAPVNLALRMRFNPNLEQSWFGSLMEIINN 186

Query: 61  VTMLSIILTGAALIREREHGTIEHLLVMPVTPLEIMLAKVWSMGLVVLLAAAAALVFIVQ 120
           VTMLSIILTGAALIREREHGTIEHLLVMPVTP EIMLAKVWSMG+VV LAA A+L+ IV+
Sbjct: 187 VTMLSIILTGAALIREREHGTIEHLLVMPVTPAEIMLAKVWSMGVVVALAALASLLLIVR 246

Query: 121 GALQVPVQGSVWLFLAVAALHLFATTSMGIFMAMLARSMPQFGMLVVLVLLPLQLLSGGS 180
           GAL VP++GSV LF+ V  LHLFATTSMGIFMA LARSMPQFGML VLVLLPLQLLSGGS
Sbjct: 247 GALHVPIEGSVALFMLVTCLHLFATTSMGIFMATLARSMPQFGMLTVLVLLPLQLLSGGS 306

Query: 181 TPRESMPLLVQNIMLAAPTTHFVSAAQAVLYRGAGAAVIWPQMLAIMGIGAALFAAALMR 240
           TPRESMP+LVQ+IMLAAPTTHFV+A QA+LYRGAG  VIWPQ+LAI GIGA LF AAL R
Sbjct: 307 TPRESMPVLVQDIMLAAPTTHFVAAGQAILYRGAGLEVIWPQLLAIFGIGAVLFMAALGR 366

Query: 241 FRKTIGQMA 249
           FRKTI QMA
Sbjct: 367 FRKTISQMA 375


>gi|300311268|ref|YP_003775360.1| multidrug ABC transporter permease
           [Herbaspirillum seropedicae SmR1]
          Length = 375

 Score =  265 bits (677), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 143/248 (57%), Positives = 191/248 (77%)

Query: 1   MSQAFTGNSYILEIINTEVAEFLQRYRGIAAAPAELVLHSRFNPNLERAWFGALMEIINN 60
           M QA++G++Y+ +I+  E+  FLQ+ +      A L L +RFNP LE+ WF ++++II+N
Sbjct: 127 MDQAYSGSAYVEQILQLEIRRFLQKRQDEPREAATLALRARFNPALEKTWFSSVLQIIDN 186

Query: 61  VTMLSIILTGAALIREREHGTIEHLLVMPVTPLEIMLAKVWSMGLVVLLAAAAALVFIVQ 120
           +TML+IIL GAALIREREHGTIEHLLVMPV+P++IM AKV +MG VVL+AA  +L  +V+
Sbjct: 187 ITMLAIILAGAALIREREHGTIEHLLVMPVSPVQIMGAKVLAMGGVVLVAATLSLHGVVR 246

Query: 121 GALQVPVQGSVWLFLAVAALHLFATTSMGIFMAMLARSMPQFGMLVVLVLLPLQLLSGGS 180
           G L VP++GSV LFL  AAL LFA T++GI +A +ARSMPQFG+L++LVLLPL LLSGG+
Sbjct: 247 GLLDVPIEGSVGLFLFGAALSLFANTALGISLATVARSMPQFGLLLMLVLLPLILLSGGA 306

Query: 181 TPRESMPLLVQNIMLAAPTTHFVSAAQAVLYRGAGAAVIWPQMLAIMGIGAALFAAALMR 240
           TPRESMP+L+Q +MLAAP+TH V   + VLYRGAG  ++WPQ+LA+  IG  L   +L R
Sbjct: 307 TPRESMPVLIQYLMLAAPSTHLVRLGEGVLYRGAGLEMVWPQLLALFLIGNILLWVSLRR 366

Query: 241 FRKTIGQM 248
            R  + QM
Sbjct: 367 LRTMLTQM 374


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.137    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 574,223
Number of extensions: 18307
Number of successful extensions: 95
Number of sequences better than 1.0e-08: 4
Number of HSP's gapped: 93
Number of HSP's successfully gapped: 4
Length of query: 249
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 166
Effective length of database: 1,226,865
Effective search space: 203659590
Effective search space used: 203659590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 129 (54.3 bits)