BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0215.p
         (327 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309606|ref|YP_003773698.1| acetate kinase [Herbaspirillum ...   195   4e-51

>gi|300309606|ref|YP_003773698.1| acetate kinase [Herbaspirillum
           seropedicae SmR1]
          Length = 397

 Score =  195 bits (496), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 121/313 (38%), Positives = 172/313 (54%), Gaps = 10/313 (3%)

Query: 1   MSDCILVLNCGSSSIKFALFNSPLPMQRTPLWSGKAD-GITGSSPTFSVSGQATEPMPVD 59
           M+  +L  N GSS+IK  +F       R  +  G+ D  +        + G+ +E   V+
Sbjct: 1   MNRLLLTFNAGSSTIKLGVFRLDGARAR-KIGQGQLDLHLAPLKLRLEIDGERSE---VE 56

Query: 60  RDAPYHAALLRIREYTIARL----GGNRVIAVVHRVVHGGAKYSEPVCVSHDVLADLRSF 115
            DA   AA+ R+ E  + +L        + AV HRVVHGG   ++ V +   +  +L + 
Sbjct: 57  IDADPAAAMDRVLEQVLHQLEVGHAQGELCAVGHRVVHGGLHLAQAVRLDDAIETELENL 116

Query: 116 IPLAPLHQPFALEAIESLLQSRPELMQIACFDTAFHHGLPRVEKMLPIPYSAWERGLRRY 175
            PLAPLHQP  L  I ++ + RP L Q A FDTAFH     + +   +P    E G+ RY
Sbjct: 117 APLAPLHQPQNLRLIRAIARLRPGLPQTASFDTAFHASQDALARRFALPRRLHEEGVLRY 176

Query: 176 GFHGLSYAYMSVVLAERHGDAARGNTIVAHLGSGASLCAMQDLRSVATTMGFSALDGLMM 235
           GFHG+SY+Y++  +  +    A    +VAHLG+GASLCA+   RSV  + GFS LDG+ M
Sbjct: 177 GFHGISYSYVAAEMRRQALPEAHARVVVAHLGNGASLCALHAGRSVDASTGFSTLDGVPM 236

Query: 236 GTRCGSLDPGVLLYLMETEQLSPQQLGHLLYHESGLQGISGTSSDPRELIXGKSARWRRC 295
           GTRCG+LD GVLLYL+  + +S  +L  LLYH SGL G+SG S+D R L   + +  R  
Sbjct: 237 GTRCGALDAGVLLYLLR-QGMSLDELEDLLYHRSGLLGVSGLSADVRSLQQSQDSAAREA 295

Query: 296 LAASTCWCSPPAS 308
           L      C+  A+
Sbjct: 296 LDLFALRCAGEAA 308


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.135    0.418 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,008,169
Number of extensions: 43860
Number of successful extensions: 116
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 115
Number of HSP's successfully gapped: 1
Length of query: 327
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 242
Effective length of database: 1,217,395
Effective search space: 294609590
Effective search space used: 294609590
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 131 (55.1 bits)