BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0214.p
         (157 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300313176|ref|YP_003777268.1| universal stress protein [Herba...    56   2e-09

>gi|300313176|ref|YP_003777268.1| universal stress protein
           [Herbaspirillum seropedicae SmR1]
          Length = 145

 Score = 55.8 bits (133), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/152 (30%), Positives = 74/152 (48%), Gaps = 13/152 (8%)

Query: 1   MYNTILVPIDGSVTAESAVGEARALAVLCKARVRLLHVLDMTTLSNGFE-----DPNVYI 55
           M+ TILVP DGS  ++ A+  A   A    AR+  + V +    S   E     DP +Y 
Sbjct: 1   MFKTILVPTDGSERSDKAIATAVDYAKNSGARLIGITVAEPYPFSPLAESSMAIDPALYE 60

Query: 56  ATTRPLALKEAEDML-ARTAALLEKSGITVDIEIMEAMGARVADVIIERAVTNKADLIVI 114
              + LA +  + +  A TAA     G+    EI+  M     + II+ A  +  D I +
Sbjct: 61  ENVKTLAQQHIKKITDAATAA-----GVPCQTEIV--MSFNPDEEIIKAAQLHACDAIFM 113

Query: 115 GTHGRRGVHRFLMGSDAEQVARLSPVPVLLVK 146
            +HGR G+ R  +GS  ++V   S +PVL+++
Sbjct: 114 ASHGRSGLSRIFLGSKTQKVLTHSTIPVLVLR 145


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.320    0.133    0.361 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 431,070
Number of extensions: 15784
Number of successful extensions: 66
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 66
Number of HSP's successfully gapped: 1
Length of query: 157
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 79
Effective length of database: 1,250,540
Effective search space: 98792660
Effective search space used: 98792660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)