BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0212.p
         (140 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311718|ref|YP_003775810.1| hemerythrin protein [Herbaspiri...    67   5e-13

>gi|300311718|ref|YP_003775810.1| hemerythrin protein
           [Herbaspirillum seropedicae SmR1]
          Length = 135

 Score = 67.4 bits (163), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 62/123 (50%)

Query: 14  ITEMDNAHKALIQDLTDIMSAPDPEFSARLLRIVALLENDFREEEALMEKINYPELRVHR 73
           I EM   H+ ++++   +   P  EF+     ++  +E DFR EE++ME+I+YP+L+ H 
Sbjct: 13  IEEMVREHQLILEEFARLAVVPPAEFAPVYAGLLGRIEADFRAEESIMEQIDYPDLQNHL 72

Query: 74  EEHAELLSTLHHVVPKAMSGDYVLPRQVLNMLPQWFLNHLVRMDSALVKALNAAGARPVK 133
            +HA LL  LH   P    GD      +   +P   ++H+  MD  L  A+     +  +
Sbjct: 73  RDHAGLLGILHKARPYIDEGDMSFAEMIRASMPMMLVHHMNSMDMLLADAIARFITKDSE 132

Query: 134 HAE 136
           H +
Sbjct: 133 HGQ 135


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.131    0.382 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 422,452
Number of extensions: 15187
Number of successful extensions: 57
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 1
Length of query: 140
Length of database: 1,619,870
Length adjustment: 76
Effective length of query: 64
Effective length of database: 1,260,010
Effective search space: 80640640
Effective search space used: 80640640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)