BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0211.p (240 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300312302|ref|YP_003776394.1| acetoacetyl-CoA reductase [Herb... 220 8e-59 gi|300311249|ref|YP_003775341.1| 3-oxoacyl-[acyl-carrier-Protein... 184 7e-48 gi|300313009|ref|YP_003777101.1| 3-oxoacyl-(acyl-carrier-protein... 140 1e-34 gi|300310680|ref|YP_003774772.1| 3-oxoacyl-[acyl-carrier-protein... 135 4e-33 gi|300310426|ref|YP_003774518.1| gluconate 5-dehydrogenase oxido... 133 2e-32 >gi|300312302|ref|YP_003776394.1| acetoacetyl-CoA reductase [Herbaspirillum seropedicae SmR1] Length = 246 Score = 220 bits (561), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 117/242 (48%), Positives = 155/242 (64%), Gaps = 5/242 (2%) Query: 3 RVALVTGGTRGLGAAIAVALRDAGYRVA-----TVHRSNVDAAQAFREKTSIPVFCWDVA 57 R+A VTGG G+G AI L GY V R + A + I +V+ Sbjct: 4 RIAYVTGGMGGIGTAICTRLCKDGYTVVAGCGPNSTRKDKWLATMREQGFDIHASEGNVS 63 Query: 58 DFSACREGIRQVESEIGPVDILVNNAGITRDAVLHRMTPEQWSAVILTNLGSVFNMSRNA 117 ++ + + +V +EIG VD+LVNNAGITRD +M+ + W AVI TNL S+FN+++ Sbjct: 64 NWESTKAAFEKVRAEIGEVDVLVNNAGITRDGQFRKMSKDDWDAVIDTNLNSLFNVTKQV 123 Query: 118 IEGMRERGFGRIVNISSVNGERGQIGQANYAAAKAGILGFTKSLALESARKNITVNAIAP 177 IEGM ERGFGRI+NISSVNG++GQ GQ NY+ AKAGI GFT +LA E A K +TVN ++P Sbjct: 124 IEGMCERGFGRIINISSVNGQKGQFGQTNYSTAKAGIHGFTMALAQEVATKGVTVNTVSP 183 Query: 178 GYCDTDMVAAVPKEVLDKIVAGIPVGRLGNGGDIARLVLFLADDAASFITGATFDANGGQ 237 GY TDMV A+ EVL+KIV+GIPV RLG +IA +V ++A + TG+ F NGG Sbjct: 184 GYIGTDMVRAIRPEVLEKIVSGIPVKRLGEPEEIASIVAWIASSEGGYATGSDFSLNGGL 243 Query: 238 FM 239 +M Sbjct: 244 YM 245 >gi|300311249|ref|YP_003775341.1| 3-oxoacyl-[acyl-carrier-Protein] reductase oxidoreductase [Herbaspirillum seropedicae SmR1] Length = 251 Score = 184 bits (466), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 108/242 (44%), Positives = 146/242 (60%), Gaps = 5/242 (2%) Query: 3 RVALVTGGTRGLGAAIAVALRDAGYRVATVHRSNVDAAQAFREKTSI-PVF----CWDVA 57 +VALVTG +RG+G AIA L G +V S AA ++ P +V Sbjct: 9 QVALVTGASRGIGRAIATELARQGAKVIGTATSESGAAAITEYLAALGPEAGRGAVLNVN 68 Query: 58 DFSACREGIRQVESEIGPVDILVNNAGITRDAVLHRMTPEQWSAVILTNLGSVFNMSRNA 117 D A + QV+ + G + ILVNNAGIT+D + RM E+W +VI TNL +V +SR Sbjct: 69 DAEASVALVEQVQKDFGSLSILVNNAGITQDQLAMRMKDEEWDSVIATNLTAVGRLSRAV 128 Query: 118 IEGMRERGFGRIVNISSVNGERGQIGQANYAAAKAGILGFTKSLALESARKNITVNAIAP 177 + GM + GRI+NI+SV GE G GQ NYAAAKAG+ G +++LA E +NITVN +AP Sbjct: 129 LRGMMKARTGRIINITSVVGEAGNPGQMNYAAAKAGVAGMSRALAREIGSRNITVNCVAP 188 Query: 178 GYCDTDMVAAVPKEVLDKIVAGIPVGRLGNGGDIARLVLFLADDAASFITGATFDANGGQ 237 G+ DTDM A+ ++ I+ IP+GRLG +IA V FLA A++ITG T + NGG Sbjct: 189 GFIDTDMTRALNEQQSAAILQQIPLGRLGAAEEIAYAVAFLASPQAAYITGTTLNVNGGM 248 Query: 238 FM 239 +M Sbjct: 249 YM 250 >gi|300313009|ref|YP_003777101.1| 3-oxoacyl-(acyl-carrier-protein) reductase [Herbaspirillum seropedicae SmR1] Length = 245 Score = 140 bits (352), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 92/237 (38%), Positives = 129/237 (54%), Gaps = 9/237 (3%) Query: 6 LVTGGTRGLGAAIAVALRDAGYRVATVHRSNVDAAQAFREKTS-----IPVFCWDVADFS 60 VTG +RG+G AIA+ L GY + + DAA + + + V +DVA+ Sbjct: 10 FVTGSSRGIGRAIALRLAREGYDIVLHCHARRDAADQVAAEIAALGRQVRVLQFDVANRE 69 Query: 61 ACREGIRQVESEIGPVDILVNNAGITRDAVLHRMTPEQWSAVILTNLGSVFNMSRNAIEG 120 + + + G +V NAGITRD M E W +V+ TNL +N+ + Sbjct: 70 QAAQVLLADVEQHGCYYGVVCNAGITRDNAFPAMPGEDWDSVLRTNLDGFYNVLNPLVMP 129 Query: 121 M-RERGFGRIVNISSVNGERGQIGQANYAAAKAGILGFTKSLALESARKNITVNAIAPGY 179 M R R GRIV ++SV+G G GQ NY+AAKAG++G TK+LALE A+++ITVN +APG Sbjct: 130 MVRRRAAGRIVTLASVSGLIGNRGQVNYSAAKAGVIGATKALALELAKRDITVNCVAPGL 189 Query: 180 CDTDMVAAVPKEVLDKIVAGIPVGRLGNGGDIARLVLFLADDAASFITGATFDANGG 236 DTDM P +D+I+ IP R G ++A V FL A++IT NGG Sbjct: 190 IDTDMTEDAP---IDEILKLIPARRAGKPEEVAAAVAFLMSPDAAYITRQVISVNGG 243 >gi|300310680|ref|YP_003774772.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herbaspirillum seropedicae SmR1] Length = 247 Score = 135 bits (339), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 102/250 (40%), Positives = 132/250 (52%), Gaps = 15/250 (6%) Query: 1 MDR-VALVTGGTRGLGAAIAVALRDAGYRVATV-----HRSNVDAAQAFREKTSIPVFCW 54 MD+ +ALVTG RGLG +IA + AGY+VA S V A+ T++P Sbjct: 1 MDKKIALVTGAARGLGESIARKMHAAGYKVALADIDLEQVSAVAASLDASGATAMP-LAL 59 Query: 55 DV---ADFSACREGIRQVESEIGPVDILVNNAGITRDAVLHRMTPEQWSAVILTNLGSVF 111 DV DF A + I E G +LVNNAG +R A L +TPE+W V N+ F Sbjct: 60 DVRRKPDFIAACDAI---ELRWGGAAVLVNNAGRSRVAALMEITPEEWDEVTAINMKGTF 116 Query: 112 NMSRNAIEGMRERGFGRIVNISSVNGERGQIGQ-ANYAAAKAGILGFTKSLALESARKNI 170 + + +RG+GRI+NI+S+ G+ G A+YAAAK +L TK A E A + Sbjct: 117 LACQVFGKRFADRGYGRIINIASLAGQNGGTATGAHYAAAKGAVLTLTKVFARELAGAGV 176 Query: 171 TVNAIAPGYCDTDMV-AAVPKEVLDKIVAGIPVGRLGNGGDIARLVLFLADDAASFITGA 229 TVNAI+PG D +V VP + L +A IPV LG IA VL LA A TGA Sbjct: 177 TVNAISPGPLDLPIVREIVPADKLAATIATIPVKALGEPDFIADAVLLLASPEAGSATGA 236 Query: 230 TFDANGGQFM 239 D NGG +M Sbjct: 237 CLDINGGLYM 246 >gi|300310426|ref|YP_003774518.1| gluconate 5-dehydrogenase oxidoreductase [Herbaspirillum seropedicae SmR1] Length = 264 Score = 133 bits (334), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 85/240 (35%), Positives = 123/240 (51%), Gaps = 6/240 (2%) Query: 3 RVALVTGGTRGLGAAIAVALRDAGYRVATVHRSNVD----AAQAFREKTSIPVFCWDVAD 58 ++AL+TG + G+G A+A + AG + R AAQ E +I +D Sbjct: 20 KLALITGSSGGIGLALARGMAQAGAAIVLNGRDAGKLAAVAAQLRAEGHTIHESSFDATS 79 Query: 59 FSACREGIRQVESEIGPVDILVNNAGITRDAVLHRMTPEQWSAVILTNLGSVFNMSRNAI 118 + ++++ESEIGP+ ILVNNAGI R L W +I TNL SVF ++ Sbjct: 80 SEEVKAAVQKIESEIGPIGILVNNAGIQRRNPLEEFKESDWHDLISTNLNSVFFAAQAVA 139 Query: 119 EGMRERGFGRIVNISSVNGERGQIGQANYAAAKAGILGFTKSLALESARKNITVNAIAPG 178 M RG G+I+NI SV E G+ G A Y A K + FTK +A++ + I VN + PG Sbjct: 140 RHMIPRGAGKIINICSVQSELGRPGIAPYTATKGAVKMFTKGMAIDWGKYGIQVNGLGPG 199 Query: 179 YCDTDMVAAVPKEV--LDKIVAGIPVGRLGNGGDIARLVLFLADDAASFITGATFDANGG 236 Y T+M A+ + D +V P R G+ D+ +FLA DA+ F+ G +GG Sbjct: 200 YFKTEMNMALVNDAKFTDWLVGRTPSRRWGDVEDLVGAAVFLASDASRFVNGHILYVDGG 259 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.321 0.136 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 765,168 Number of extensions: 31489 Number of successful extensions: 268 Number of sequences better than 1.0e-08: 48 Number of HSP's gapped: 165 Number of HSP's successfully gapped: 48 Length of query: 240 Length of database: 1,619,870 Length adjustment: 83 Effective length of query: 157 Effective length of database: 1,226,865 Effective search space: 192617805 Effective search space used: 192617805 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)