BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0210.p (538 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311045|ref|YP_003775137.1| proline/glycine betaine ABC tra... 679 0.0 gi|300309936|ref|YP_003774028.1| spermidine/putrescine ABC trans... 170 3e-43 gi|300310986|ref|YP_003775078.1| sulfate/molybdate ABC transport... 166 4e-42 gi|300311547|ref|YP_003775639.1| ABC transporter ATPase [Herbasp... 162 7e-41 gi|300312386|ref|YP_003776478.1| sugar ABC transporter ATPase [H... 157 2e-39 >gi|300311045|ref|YP_003775137.1| proline/glycine betaine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 377 Score = 679 bits (1751), Expect = 0.0, Method: Compositional matrix adjust. Identities = 329/379 (86%), Positives = 351/379 (92%), Gaps = 2/379 (0%) Query: 160 MIELEQLSKTYTQKDGTPVKAVDSVSLKVAEGEICVFLGPSGCGKTTTLKMINRLIAPTS 219 MI L+QLSKTYTQKDGT VKAVD+VSLKVAEGEICVFLGPSGCGKTTTLKMINRLI PTS Sbjct: 1 MIALDQLSKTYTQKDGTQVKAVDAVSLKVAEGEICVFLGPSGCGKTTTLKMINRLINPTS 60 Query: 220 GRVLLNGEDTTGIDEVSLRRHIGYVIQQIGLFPNMTIEENITIVPRLLGWDKKRCRERAT 279 GRVLLNG+DT+GIDEV LRRHIGYVIQQIGLFPNMTIEENITIVPRLLGWDKKRC+ERAT Sbjct: 61 GRVLLNGQDTSGIDEVELRRHIGYVIQQIGLFPNMTIEENITIVPRLLGWDKKRCQERAT 120 Query: 280 ELMAMVALDPAKFLKRYPRELSGGQQQRIGVIRALAADAPVLLMDEPFGAVDPINRESIQ 339 ELMAMVALDP KFLKRYPRELSGGQQQRIGVIRALAADAPVLLMDEPFGAVDPINRESIQ Sbjct: 121 ELMAMVALDPKKFLKRYPRELSGGQQQRIGVIRALAADAPVLLMDEPFGAVDPINRESIQ 180 Query: 340 NEFFQMQRQLKKTVIMVSHDIDEAIKLGDQVAIFRAGKLVQFDHPDTLLARPKDDFVSAF 399 NEFFQMQRQL KTVIMVSHDIDEAIKLGD+VA+FRAGKLVQFD+PDTLLARPKDDFVSAF Sbjct: 181 NEFFQMQRQLNKTVIMVSHDIDEAIKLGDKVAVFRAGKLVQFDNPDTLLARPKDDFVSAF 240 Query: 400 VGQDHTLKRLLLVRAGDAATTPSTARPGLPLQDAMALMDDQDARYLTITDNDNRALGYVS 459 VGQDHTLKRLLLVRAG+AATTP TA P + A+ALMDDQD+RYLTI D DNRALGY++ Sbjct: 241 VGQDHTLKRLLLVRAGEAATTPPTAHPDVSCDQALALMDDQDSRYLTIIDADNRALGYLT 300 Query: 460 RRDIRSTGTAGVSGDKVKPFNLNATPDENLRVVLSKMYKHSASWMPVIDAEGKYIGEVTQ 519 RRD+R G+ GV+ DKV+PF +NA PDENLRVVLSKMYKHS SWMPVI +G Y+GEVTQ Sbjct: 301 RRDVR--GSTGVAEDKVRPFTMNADPDENLRVVLSKMYKHSTSWMPVIANDGSYVGEVTQ 358 Query: 520 DSIADYLSSGKSRGQKIAA 538 DSIA YLSSGKSRG +AA Sbjct: 359 DSIASYLSSGKSRGMAMAA 377 >gi|300309936|ref|YP_003774028.1| spermidine/putrescine ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 361 Score = 170 bits (430), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 114/307 (37%), Positives = 164/307 (53%), Gaps = 16/307 (5%) Query: 154 SERTAKMIELEQLSKTYTQKDGTPVKAVDSVSLKVAEGEICVFLGPSGCGKTTTLKMINR 213 S + A I L Q +K++ +GT +A+ + L++ GE V LGPSGCGKTTTL+MI Sbjct: 3 SHQEAVSIRLSQCAKSFA--NGT--RALQPLDLQIHPGETLVLLGPSGCGKTTTLRMIAG 58 Query: 214 LIAP-TSGRVLLNGEDTTGIDEVSLRRHIGYVIQQIGLFPNMTIEENITIVPRLLGWDKK 272 L P GRVL ED T + +R +G V Q LFPNM++ ENI ++ Sbjct: 59 LEFPDEGGRVLFGEEDVTMLP--IEKRGVGMVFQNYALFPNMSVGENIAYGMKIRKIAAG 116 Query: 273 RCRERATELMAMVALDPAKFLKRYPRELSGGQQQRIGVIRALAADAPVLLMDEPFGAVDP 332 ER L+ MV L R +LSGGQ+QR+ + RALA + VLL+DEP A+D Sbjct: 117 ERAERVERLLEMVHLQ--GLSHRRVDQLSGGQKQRVALARALAMEPRVLLLDEPLTALDA 174 Query: 333 INRESIQNEFFQMQRQLKKTVIMVSHDIDEAIKLGDQVAIFRAGKLVQFDHPDTLLARPK 392 RE+++++ ++ R L T I V+HD EA+ LGD++ + GK+ Q P + P Sbjct: 175 KLREAVRSDLNKLLRSLGITAIYVTHDQGEAMALGDRIVVMERGKISQIGTPQEIYYHPA 234 Query: 393 DDFVSAFVGQDHTLKRLLLVRAGDAATTPSTARPGLP----LQDAMALMDDQDARYLTIT 448 +DFV+ F+G + R+ + AGD P+ P P Q A AL +D + IT Sbjct: 235 NDFVAEFIG---AMNRVDGIVAGDRLQLPTGTLPLPPDAVAGQPAQALFRPEDVEVIDIT 291 Query: 449 DNDNRAL 455 + D L Sbjct: 292 EADAHCL 298 >gi|300310986|ref|YP_003775078.1| sulfate/molybdate ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 359 Score = 166 bits (420), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 94/236 (39%), Positives = 136/236 (57%), Gaps = 8/236 (3%) Query: 170 YTQKDGTPVKAVDSVSLKVAEGEICVFLGPSGCGKTTTLKMINRLIAPTSGRVLLNGEDT 229 + QK A++ VSL GE+ LGPSGCGKTT L++I L +P SG+VLL+GED Sbjct: 7 HIQKRFGSFTALNDVSLNFPAGELTALLGPSGCGKTTLLRIIAGLESPDSGQVLLDGEDA 66 Query: 230 TGIDEVSLRRHIGYVIQQIGLFPNMTIEENIT----IVPRLLGWDKKRCRERATELMAMV 285 + R +G+V Q LF +MT+ ENI + PR + RE+ L+ +V Sbjct: 67 SA--RHVRERQVGFVFQHYALFKHMTVFENIAFGLRVKPRSQRPSEAVIREKVKRLLELV 124 Query: 286 ALDPAKFLKRYPRELSGGQQQRIGVIRALAADAPVLLMDEPFGAVDPINRESIQNEFFQM 345 LD RYP +LSGGQ+QRI + RALA + VLL+DEPFGA+D R+ ++ ++ Sbjct: 125 QLD--WLADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWLRRL 182 Query: 346 QRQLKKTVIMVSHDIDEAIKLGDQVAIFRAGKLVQFDHPDTLLARPKDDFVSAFVG 401 +L T I V+HD +EA+++ DQV + G++ Q P+ + P FV F+G Sbjct: 183 HDELHVTSIFVTHDQEEALEVADQVVLMNKGQVEQIGTPEAVYNHPASPFVYGFLG 238 >gi|300311547|ref|YP_003775639.1| ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 359 Score = 162 bits (410), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 96/257 (37%), Positives = 153/257 (59%), Gaps = 11/257 (4%) Query: 150 TTSDSERTAKMIELEQLSKTYTQKDGTPVKAVDSVSLKVAEGEICVFLGPSGCGKTTTLK 209 T + E A + + ++ K + A+D VSL+V GE+ LGPSGCGKTT L+ Sbjct: 2 TAATEEDAAVFLSVREVEKRFG-----SFTALDRVSLEVRRGEMVCLLGPSGCGKTTLLR 56 Query: 210 MINRLIAPTSGRVLLNGEDTTGIDEVSLRRHIGYVIQQIGLFPNMTIEENITIVPRLLGW 269 I L SGR+ +G D + + + R G + Q LFPN+++ +N+ L Sbjct: 57 TIAGLERQDSGRLHADGRDISQLPPQA--RDYGILFQSYALFPNLSVADNVAY--GLGRM 112 Query: 270 DKKRCRERATELMAMVALDPAKFLKRYPRELSGGQQQRIGVIRALAADAPVLLMDEPFGA 329 +++ RER TE+++MV LD ++ +YP +LSGGQQQR+ + RALA +LL+DEP A Sbjct: 113 SRQQKRERVTEMLSMVGLDGSQ--DKYPGQLSGGQQQRVALARALAPSPSLLLLDEPLSA 170 Query: 330 VDPINRESIQNEFFQMQRQLKKTVIMVSHDIDEAIKLGDQVAIFRAGKLVQFDHPDTLLA 389 +D RE +Q E ++Q+Q + T +MV+HD +EA+ + D++A+ + G++ QF P+ + Sbjct: 171 LDAQVREHLQLEIRRLQKQFRITTLMVTHDQEEAMVMADRIAVMQHGRIEQFGTPEQIYR 230 Query: 390 RPKDDFVSAFVGQDHTL 406 RP FV+ F+GQ + L Sbjct: 231 RPATPFVADFIGQANWL 247 >gi|300312386|ref|YP_003776478.1| sugar ABC transporter ATPase [Herbaspirillum seropedicae SmR1] Length = 349 Score = 157 bits (398), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 85/223 (38%), Positives = 130/223 (58%), Gaps = 4/223 (1%) Query: 179 KAVDSVSLKVAEGEICVFLGPSGCGKTTTLKMINRLIAPTSGRVLLNGEDTTGIDEVSLR 238 +AV ++ +V G+ V LGPSGCGK+TTL++I L P+SG + + G D T + + Sbjct: 17 QAVRNIDFEVKAGQFTVLLGPSGCGKSTTLRLIAGLDKPSSGSIHIGGRDVTQLPPA--Q 74 Query: 239 RHIGYVIQQIGLFPNMTIEENITIVPRLLGWDKKRCRERATELMAMVALDPAKFLKRYPR 298 R I V Q LFP++++ +NI R+ + R + ++ L A L+R P Sbjct: 75 RKISMVFQSYALFPHLSVRDNILFGVRVRKEPRAGYETRLKRVADILGL--AHLLERRPA 132 Query: 299 ELSGGQQQRIGVIRALAADAPVLLMDEPFGAVDPINRESIQNEFFQMQRQLKKTVIMVSH 358 +LSGGQQQR+ + RA+ ADAPV LMDEP +D R+ ++ E +Q+QL T++ V+H Sbjct: 133 QLSGGQQQRVALGRAIIADAPVCLMDEPLSNLDAQLRQEMRREIRALQQQLNMTMVYVTH 192 Query: 359 DIDEAIKLGDQVAIFRAGKLVQFDHPDTLLARPKDDFVSAFVG 401 D EA+ + DQV + R G++ Q P L A+P F + F+G Sbjct: 193 DQTEAMSMADQVILLREGRIEQDAAPADLYAQPATAFAARFIG 235 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.320 0.137 0.402 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,644,667 Number of extensions: 67647 Number of successful extensions: 692 Number of sequences better than 1.0e-08: 130 Number of HSP's gapped: 458 Number of HSP's successfully gapped: 143 Length of query: 538 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 448 Effective length of database: 1,193,720 Effective search space: 534786560 Effective search space used: 534786560 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)