BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0209.p
         (263 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311043|ref|YP_003775135.1| proline/glycine betaine ABC tra...   407   e-115

>gi|300311043|ref|YP_003775135.1| proline/glycine betaine ABC
           transporter periplasmic substrate-binding protein
           [Herbaspirillum seropedicae SmR1]
          Length = 306

 Score =  407 bits (1046), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 190/263 (72%), Positives = 231/263 (87%)

Query: 1   LILSSMTAQYLRAKGYDVDLRNGLGSTLMRKAQESKQLDVVWEYTGTSLIVYNHVDEKLD 60
           L+LS MTAQYLRAKGYD +L+NGLG+TLMR A ES QLD+VW+YTGT+LIVYNH+++KLD
Sbjct: 44  LLLSDMTAQYLRAKGYDTELKNGLGTTLMRSALESGQLDIVWDYTGTALIVYNHIEDKLD 103

Query: 61  AEATYQRVKELDRNIGLVWLNESGLNNTYAFAMPQKLADEQGINTLEDLARHITQEQQAG 120
            +  YQ+VKELD   GL WLN+S LNNTYAFAMP+ LAD+  I++L+DLA+ I ++ + G
Sbjct: 104 PDQIYQKVKELDAPRGLTWLNQSELNNTYAFAMPRALADKYNIHSLQDLAKRINEDDKEG 163

Query: 121 GKPQLMGVDYEFASRPDGLEPMQKLYGFQLDRSEVKQMDPGLVYTALRNEQLDVGLTYSS 180
           G+P LMGVDYEFASRPDGL PMQ+LYGF+LDRSEVKQMDPGLVYTAL+NEQL VGLTY+S
Sbjct: 164 GQPHLMGVDYEFASRPDGLGPMQQLYGFKLDRSEVKQMDPGLVYTALKNEQLFVGLTYAS 223

Query: 181 DGRIKGFNLKLLEDNKGYFAAYKATPVVREEVLQEHPQLADQLNALSAAIDTEKMTDMNK 240
           DGRIKGF+L+LLED+KGYFAAYKATPVVR+E+L +HP+LA+QLN L+A IDT  MT++NK
Sbjct: 224 DGRIKGFDLQLLEDDKGYFAAYKATPVVRQEILAKHPKLAEQLNELAAKIDTATMTELNK 283

Query: 241 RVDIDQEPIGKVVTEFLQQQGLI 263
           RVDIDQEP+ KV  +FL+Q GLI
Sbjct: 284 RVDIDQEPVAKVAADFLKQAGLI 306


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.133    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 807,130
Number of extensions: 33615
Number of successful extensions: 68
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 1
Length of query: 263
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 180
Effective length of database: 1,226,865
Effective search space: 220835700
Effective search space used: 220835700
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 129 (54.3 bits)