BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0208.p (219 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300311042|ref|YP_003775134.1| proline/glycine betaine ABC tra... 313 8e-87 gi|300311044|ref|YP_003775136.1| proline/glycine betaine ABC tra... 112 3e-26 gi|300309716|ref|YP_003773808.1| nitrate/sulfonate/bicarbonate A... 59 3e-10 gi|300313548|ref|YP_003777640.1| nitrate/sulfonate/bicarbonate A... 54 7e-09 >gi|300311042|ref|YP_003775134.1| proline/glycine betaine ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 237 Score = 313 bits (802), Expect = 8e-87, Method: Compositional matrix adjust. Identities = 157/188 (83%), Positives = 172/188 (91%) Query: 2 LAVAGLIQWIGMDVITQYRSDLIYYTGKHLQLVAWSMLLAIATGVPAGVVLSRPALGRRA 61 L +AGL+ WIG DVI +YR DLIYYTGKHL+LV SMLLA+ATG+PAG+ LSRP R A Sbjct: 16 LVLAGLVWWIGPDVIQKYRGDLIYYTGKHLELVFTSMLLALATGIPAGIALSRPGAQRSA 75 Query: 62 EYFIQVFNIGNTIPSIAVLALALAFFGIGNWPTILALWLASLLPIVRNTFEGLKNVPAPL 121 E FIQ+FNIGNTIPSIAVLALALAFFGIGN PTILALWLASLLPIVRNT+EGLKNVPA + Sbjct: 76 EKFIQIFNIGNTIPSIAVLALALAFFGIGNGPTILALWLASLLPIVRNTYEGLKNVPAAM 135 Query: 122 REAAKGIGMKPYQVLLRVELPNALPIIVGGIRTALVINVGTAPLSMLIGGESLGGLIFPG 181 +EAA+GIGMKP+Q+LLRVELPNALPIIVGG+RTAL INVGTAPLSMLIGGESLGGLIFPG Sbjct: 136 KEAARGIGMKPHQILLRVELPNALPIIVGGVRTALAINVGTAPLSMLIGGESLGGLIFPG 195 Query: 182 IYLNNHGQ 189 IYLNNHGQ Sbjct: 196 IYLNNHGQ 203 >gi|300311044|ref|YP_003775136.1| proline/glycine betaine ABC transporters permease [Herbaspirillum seropedicae SmR1] Length = 216 Score = 112 bits (279), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 80/205 (39%), Positives = 125/205 (60%), Gaps = 22/205 (10%) Query: 13 MDVITQYRSD---LIYYTGKHLQLVAWSMLLAIATGVPAGVVLSR------PALGRRAEY 63 M++ +SD ++ T +HL+LV ++ LAIA GVP G+++ R P +G Sbjct: 1 MNIFQYLQSDWPNILELTLQHLKLVGIAVSLAIAIGVPLGILIVRVRWLAGPLMG----- 55 Query: 64 FIQVFNIGNTIPSIAVLALALAFF-----GIGNWPTILALWLASLLPIVRNTFEGLKNVP 118 + I T+PSIA+ L + F GIG P I A++L SLLPI+RNT+ L+N+ Sbjct: 56 ---LATIVLTLPSIALFGLMIPLFSKFGAGIGPLPAITAVFLYSLLPIMRNTYLALENIE 112 Query: 119 APLREAAKGIGMKPYQVLLRVELPNALPIIVGGIRTALVINVGTAPLSMLIGGESLGGLI 178 A ++EA GIGM +Q L V+LP A+P+I+GG+RTA+V+N+G ++ +IG LG LI Sbjct: 113 AGIKEAGIGIGMTFWQRLRMVDLPLAVPVILGGVRTAVVMNIGVMAIAAIIGAGGLGVLI 172 Query: 179 FPGIYLNNHGQLLLGAAATALLALL 203 I +N +L++GA ++LA++ Sbjct: 173 LHAISQSNMQKLVVGAVMISVLAII 197 >gi|300309716|ref|YP_003773808.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 273 Score = 58.9 bits (141), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 34/90 (37%), Positives = 53/90 (58%), Gaps = 4/90 (4%) Query: 74 IPSIAVLALALAFFGIGNWPTILALWLASLLPIVRNTFEGLKNVPAPLREAAKGIGMKPY 133 IP IA + LA+ +FG+GN P + + L + P++ NT G++ V + AA+ +G Sbjct: 122 IPPIAYIPLAILWFGLGNPPALFLISLGAFFPVLMNTIAGVRQVDSIYLRAARNLGASQS 181 Query: 134 QVLLRVELPNALPIIVGGIRTALVINVGTA 163 + LRV LP A+P I+ G+R I +GTA Sbjct: 182 TLFLRVMLPAAVPYILSGVR----IGIGTA 207 >gi|300313548|ref|YP_003777640.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] Length = 259 Score = 54.3 bits (129), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 52/195 (26%), Positives = 87/195 (44%), Gaps = 17/195 (8%) Query: 23 LIYYTG---KHLQLVAWSMLLAIATGVPAGVVL-----SRPALGRRAEYFIQVFNIGNTI 74 ++ Y G +H W ++ A V GV L S P L A + FN + Sbjct: 53 MVDYAGPITEHALSTFWVTMVGFAIAVVVGVTLGFVIGSSPMLYAAAYPLMTAFN---AL 109 Query: 75 PSIAVLALALAFFGIGNWPTILALWLASLLPIVRNTFEGLKNVPAPLREAAKGIGMKPYQ 134 P A + + + +FGIG P IL +L S PI+ N GL + L + + +G + Sbjct: 110 PKAAFVPVLVVWFGIGAGPAILTAFLISFFPIMVNIATGLATLEPELEDVLRVLGARRMD 169 Query: 135 VLLRVELPNALPIIVGGIRTALVIN-VGTAPLSMLIGGESLGGLIFPG-----IYLNNHG 188 +LL+V LP ++P ++ A+ + VG+ M + +G L+ + L G Sbjct: 170 ILLKVGLPRSMPYFFASLKVAITLAFVGSTVSEMNASNQGIGYLLVSAGSSMKMPLAFAG 229 Query: 189 QLLLGAAATALLALL 203 +++GA A A+ L Sbjct: 230 LVVIGAMAMAMYELF 244 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.324 0.141 0.426 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 709,882 Number of extensions: 29817 Number of successful extensions: 211 Number of sequences better than 1.0e-08: 12 Number of HSP's gapped: 214 Number of HSP's successfully gapped: 12 Length of query: 219 Length of database: 1,619,870 Length adjustment: 82 Effective length of query: 137 Effective length of database: 1,231,600 Effective search space: 168729200 Effective search space used: 168729200 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 128 (53.9 bits)