BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0207.p
         (229 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311041|ref|YP_003775133.1| hypothetical protein Hsero_1712...   320   8e-89

>gi|300311041|ref|YP_003775133.1| hypothetical protein Hsero_1712
           [Herbaspirillum seropedicae SmR1]
          Length = 232

 Score =  320 bits (819), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 157/217 (72%), Positives = 183/217 (84%), Gaps = 1/217 (0%)

Query: 12  IAAALVLTSTLAFALSLSDLSNQDATSGLKAALEKGANVAVSKLGVENGFLNNDKVKIQL 71
           +AA+ +L S  A A SLSDLSNQDAT+GLKAALEKGA+ AV+ LG +NGFLNNDKVKI L
Sbjct: 12  VAASFLLASCGALAFSLSDLSNQDATAGLKAALEKGASSAVANLGRQNGFLNNDKVKIHL 71

Query: 72  PGPLQQAMPLLKMTGQGQKLDDLVVSMNRAAESAVPLAKPLLINAVKSMSVSDAKNILSG 131
           PG L+QAMP+L+MTG G ++D LV  MN AAE+AVPLAKPLL+NAVKSMSV+DAKNIL+G
Sbjct: 72  PGALEQAMPILRMTGMGSQVDGLVADMNHAAEAAVPLAKPLLVNAVKSMSVTDAKNILAG 131

Query: 132 GETSVTDFFRQKTATPLGEKFLPIVKKITDKNGLSAKYNGTMGQVAKTGLVSGDQATVEG 191
           G+TSVTDFFRQKT+  L  KFLPIV++ITDKNGLSA+YN  MGQ +KTGLVS +Q+TVEG
Sbjct: 132 GDTSVTDFFRQKTSAELAVKFLPIVRQITDKNGLSARYNAVMGQASKTGLVSSEQSTVEG 191

Query: 192 YVTQRSLDGLFYMIGEEEKAIRADPIG-GPXPFWPVF 227
           YVTQR+LDGLF MIGEEEKAIR DP+G G      VF
Sbjct: 192 YVTQRALDGLFLMIGEEEKAIRKDPVGSGSAIIGKVF 228


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.315    0.132    0.367 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 617,345
Number of extensions: 23230
Number of successful extensions: 84
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 147
Effective length of database: 1,231,600
Effective search space: 181045200
Effective search space used: 181045200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.5 bits)
S2: 129 (54.3 bits)