BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0204.p
         (326 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310857|ref|YP_003774949.1| drug/metabolite transporter (DM...   230   1e-61
gi|300314029|ref|YP_003778121.1| permease [Herbaspirillum serope...    59   4e-10

>gi|300310857|ref|YP_003774949.1| drug/metabolite transporter (DMT)
           superfamily permease [Herbaspirillum seropedicae SmR1]
          Length = 298

 Score =  230 bits (586), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 134/286 (46%), Positives = 194/286 (67%), Gaps = 2/286 (0%)

Query: 33  YPFLAIVLWAGNVIVSKMAASAISPTAITFYRLILVLLLMSPFMLRPLWRNRAQIRRHWW 92
           +P  A+++WAGN ++SKM+AS I+P  I+FYR +L  LLMSPF+ R  W  RAQIR H  
Sbjct: 8   FPLGAVLIWAGNTVISKMSASVIAPEDISFYRWVLAALLMSPFLARQTWAARAQIRPHLG 67

Query: 93  QLGLSGLLAMALFQSLSYRAAESTTATNMAIVTALIPLLTALLSVIVLGEAITVGMAVGG 152
           ++ +  LL M LFQSL+Y AA + +AT+M I+ +L+PLLT +LS+ +L E  TVG   GG
Sbjct: 68  KIVVLALLGMVLFQSLAYFAAATASATSMGIIASLMPLLTLVLSIKLLSEPPTVGTLGGG 127

Query: 153 LLSFTGLLYLVGHGDLGAAMREGVHLGDALMLLAAFSYALYGVLLRRWKMNVPVWQAVYV 212
           +LS  GL  L+G G   A   +GV  GD LMLLA  +Y LYGV+LRRW + +  WQ +Y+
Sbjct: 128 ILSLLGLAVLIGRGHPLALFEQGVVTGDLLMLLATIAYGLYGVMLRRWALPLRTWQLLYM 187

Query: 213 QAVAALVLMLPQFLLLPAGTAALDARTLPLIAYSGIGSSILLSFLWIEGVKKLGPNRCSI 272
           Q + A+VL+ P F+L     + +    LP++ Y+GI +SI+  FLW+ GV  LG +RC+I
Sbjct: 188 QVLMAVVLLFPGFVL--GHHSPVTRENLPILLYAGIAASIISQFLWMRGVAYLGASRCAI 245

Query: 273 FINLLPVLTALFAILWLNESMHAYHLIGGGVSLAGVLLTQIVQRPL 318
           F+NL+PV T + A+L L E +H YH +GG ++L GV++ Q+ ++ L
Sbjct: 246 FVNLMPVFTVIIAVLALGEQLHGYHAVGGVITLGGVIMAQVFRQRL 291


>gi|300314029|ref|YP_003778121.1| permease [Herbaspirillum
           seropedicae SmR1]
          Length = 310

 Score = 59.3 bits (142), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 106/232 (45%), Gaps = 8/232 (3%)

Query: 92  WQLGLSGLLAMALFQSLSYRAAESTTATNMAIVTALIPLLTALLSVIVLGEAITV---GM 148
           W + L   L   LF          T A +  ++ + IP + A++S I L E I++   G 
Sbjct: 71  WLVFLESFLGNFLFTLCMITGVSMTNAVSAGVIMSAIPAVVAVMSWIFLKEKISLRVWGA 130

Query: 149 AVGGLLSFTGLLYLV--GHGDLGAAMREGVHLGDALMLLAAFSYALYGVLLRRWKMNVPV 206
              G +   GLL L   GHG   A+  +   LG+ L+  A    A Y V+ ++    +  
Sbjct: 131 VACGAVGI-GLLSLAKDGHGASAASGGQYAWLGNGLVFCAVLCEAAYAVIGKKLTAVLTP 189

Query: 207 WQAVYVQAVAALVLMLPQ--FLLLPAGTAALDARTLPLIAYSGIGSSILLSFLWIEGVKK 264
            +   V  +  L+LM P   +  L     A+ A    L+ + G+ +S+   +LW+ G+K 
Sbjct: 190 KRISAVINLWGLLLMTPMGVYTALHFDFGAVPANMWWLLLFYGLAASVWTVWLWMTGLKV 249

Query: 265 LGPNRCSIFINLLPVLTALFAILWLNESMHAYHLIGGGVSLAGVLLTQIVQR 316
           +   R  +F  +LPV  AL  +L L ES+ A       ++LAG+LL  +  R
Sbjct: 250 VPAARAGVFTVMLPVSAALVGVLALGESLSALQAGAFAIALAGMLLATLPGR 301


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.328    0.141    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 811,225
Number of extensions: 29766
Number of successful extensions: 227
Number of sequences better than 1.0e-08: 6
Number of HSP's gapped: 223
Number of HSP's successfully gapped: 6
Length of query: 326
Length of database: 1,619,870
Length adjustment: 85
Effective length of query: 241
Effective length of database: 1,217,395
Effective search space: 293392195
Effective search space used: 293392195
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 131 (55.1 bits)