BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0199.p
         (148 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300310446|ref|YP_003774538.1| sulfite reductase, flavoprotein...    91   4e-20

>gi|300310446|ref|YP_003774538.1| sulfite reductase, flavoprotein
           component [Herbaspirillum seropedicae SmR1]
          Length = 850

 Score = 90.9 bits (224), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 58/129 (44%), Positives = 76/129 (58%), Gaps = 8/129 (6%)

Query: 1   MDGLQAVRDGTRQTSLNELLSRRLLPDDLQALTALGALTPQTLVGQLRPLPHREYSIASL 60
           +DG   V     + SL + L+  +LP  +QA     A   QTL  QL+PL  R YS+AS 
Sbjct: 610 LDGATEVHCRGMRCSLADALACSVLP--MQA-----AADAQTLAQQLQPLTARSYSVASA 662

Query: 61  PQDGQLELLVRQTVLTDGSLGLGSGWLTAHLGEGGEIDLRVRENRSFHPPASDVPLILIG 120
            QDG ++LLVRQ    DG LGL SGWLT +   G  +  R+ +N  F P ++D P I IG
Sbjct: 663 MQDGTVQLLVRQQRHEDG-LGLASGWLTEYAPLGARLQARLVDNAGFAPVSADTPAIFIG 721

Query: 121 NGTGLAGLR 129
           NG+G+AGLR
Sbjct: 722 NGSGMAGLR 730


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.139    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 549,810
Number of extensions: 25117
Number of successful extensions: 81
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 80
Number of HSP's successfully gapped: 1
Length of query: 148
Length of database: 1,619,870
Length adjustment: 77
Effective length of query: 71
Effective length of database: 1,255,275
Effective search space: 89124525
Effective search space used: 89124525
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)