BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0190.p
         (158 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309951|ref|YP_003774043.1| molecular chaperone protein [He...   307   3e-85

>gi|300309951|ref|YP_003774043.1| molecular chaperone protein
           [Herbaspirillum seropedicae SmR1]
          Length = 375

 Score =  307 bits (786), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 147/158 (93%), Positives = 155/158 (98%)

Query: 1   VKIPEGIDDGMRIRSSGNGEPGMNGGPPGDLYVEIHIRQHEVFQRDGDDLHCEMPISFAK 60
           VKIPEGIDDGMRIRSSGNGEPG+NGGPPGDLYVEIHI+ H+VFQRDGDDLHCEMPISFAK
Sbjct: 218 VKIPEGIDDGMRIRSSGNGEPGVNGGPPGDLYVEIHIKPHDVFQRDGDDLHCEMPISFAK 277

Query: 61  AALGGDIEAPTLSGKASFTIPEGTQSGKTFRLRGKGIKGVRSGYAGDLFCHVVVETPVKL 120
           AALGG+IEAPTL+GKASF+IPEGTQSGKTFRLRGKGIKGVRSGY GDLFCHVVVETPVKL
Sbjct: 278 AALGGEIEAPTLNGKASFSIPEGTQSGKTFRLRGKGIKGVRSGYPGDLFCHVVVETPVKL 337

Query: 121 TERQKDLLREFEKLTAEGGAKHSPQTKTWKDKVKEFFE 158
           TERQK+LLREFE+LT EGGAKHSPQTKTWKDKVKEFFE
Sbjct: 338 TERQKELLREFEQLTTEGGAKHSPQTKTWKDKVKEFFE 375


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.316    0.138    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 473,945
Number of extensions: 18685
Number of successful extensions: 31
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 1
Length of query: 158
Length of database: 1,619,870
Length adjustment: 78
Effective length of query: 80
Effective length of database: 1,250,540
Effective search space: 100043200
Effective search space used: 100043200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 127 (53.5 bits)