BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0188.p
         (275 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309952|ref|YP_003774044.1| 3-methyl-2-oxobutanoate hydroxy...   448   e-127

>gi|300309952|ref|YP_003774044.1| 3-methyl-2-oxobutanoate
           hydroxymethyltransferase [Herbaspirillum seropedicae
           SmR1]
          Length = 275

 Score =  448 bits (1152), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 213/275 (77%), Positives = 241/275 (87%)

Query: 1   MAAYLQDVPATRKKAVTIHTLQAMRDKGDKITMLTCYDASFSALMDRSGVDTVLIGDSLG 60
           MA YLQ+  A R K VT HTLQAMR KGDKI+MLTCYDASF+ LM+R+G+DTVLIGDSLG
Sbjct: 1   MAGYLQESGAARAKPVTTHTLQAMRAKGDKISMLTCYDASFATLMERAGLDTVLIGDSLG 60

Query: 61  MVCQGHQSTLPVTVTDIAYHTASVARGNQSMLIIADMPFGAYGSPLAAFDNAVKLMQAGA 120
           MVCQGH STLPVT+ D+AYHTA+VARG ++MLIIAD+PFG Y +   AF NA  LMQAGA
Sbjct: 61  MVCQGHDSTLPVTIQDVAYHTAAVARGTRTMLIIADLPFGTYPTREEAFRNAALLMQAGA 120

Query: 121 HMVKIEGGAWLADTIRLLTERGIPVCAHLGLTPQSVHQMGGFKVQGKTLEGAELLHADAR 180
            M+K+EGG WLADTI+ LTERGIPVCAH+GLTPQSVHQ+GGFKVQGKT +GA  LHADA 
Sbjct: 121 QMIKLEGGVWLADTIKFLTERGIPVCAHIGLTPQSVHQLGGFKVQGKTSDGATQLHADAL 180

Query: 181 AVQAAGASLLVLEAIPATLGADVTAQLRIPTIGIGAGPDCSGQVLVMHDMLGVFPGHKAR 240
           AVQ AGASL+V+EA+PATLG +VT +L IPTIGIGAGPDCSGQVLVMHDMLGVFPGHK+R
Sbjct: 181 AVQQAGASLVVIEAVPATLGKEVTDRLSIPTIGIGAGPDCSGQVLVMHDMLGVFPGHKSR 240

Query: 241 FVKNFMDGAASVEEAVRGYVAAVKDGSFPAAEHCF 275
           FV+NFMDGA+ +EEAVR YVAAVKDGSFPA EHCF
Sbjct: 241 FVRNFMDGASGIEEAVRRYVAAVKDGSFPAQEHCF 275


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.135    0.396 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 894,831
Number of extensions: 37434
Number of successful extensions: 143
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 143
Number of HSP's successfully gapped: 1
Length of query: 275
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 191
Effective length of database: 1,222,130
Effective search space: 233426830
Effective search space used: 233426830
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 130 (54.7 bits)