BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0183.p (123 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309955|ref|YP_003774047.1| two-component system sensor his... 198 8e-53 gi|300312287|ref|YP_003776379.1| chemotaxis cheY protein [Herbas... 121 1e-29 gi|300311785|ref|YP_003775877.1| chemotaxis response regulator C... 96 8e-22 gi|300311034|ref|YP_003775126.1| chemotaxis response regulator p... 94 4e-21 gi|300311339|ref|YP_003775431.1| CheY chemotaxis protein [Herbas... 76 6e-16 >gi|300309955|ref|YP_003774047.1| two-component system sensor histidine kinase/response regulator protein [Herbaspirillum seropedicae SmR1] Length = 122 Score = 198 bits (504), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 94/120 (78%), Positives = 104/120 (86%) Query: 4 KTILIVDDSFSLRQTISIALKAAGYDVVEAIDGRDALNKLDGRKYNLIISDVNMPNLDGL 63 K ILIVDDSFSLRQTIS ALK+AGY V EA DG+ AL LDGRK+NL+ISD+NMP+LDGL Sbjct: 3 KNILIVDDSFSLRQTISAALKSAGYHVEEAADGKQALAHLDGRKFNLVISDLNMPHLDGL 62 Query: 64 SFVREAKQKPNYKFTPVLMLTTESGDTRKQEGKAIGVRAWVHKPFLPPVLLDAVAKLVTP 123 SFVRE KQ P YKFTPV+MLTTES + RKQEGKA G+RAWVHKPF PPVLLDAVAKL+ P Sbjct: 63 SFVREMKQMPAYKFTPVIMLTTESSEARKQEGKAAGIRAWVHKPFQPPVLLDAVAKLILP 122 >gi|300312287|ref|YP_003776379.1| chemotaxis cheY protein [Herbaspirillum seropedicae SmR1] Length = 121 Score = 121 bits (304), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 58/118 (49%), Positives = 80/118 (67%) Query: 4 KTILIVDDSFSLRQTISIALKAAGYDVVEAIDGRDALNKLDGRKYNLIISDVNMPNLDGL 63 KTIL VDDS SLRQ + +LKAAGY+V EA+DG DAL K + ++L+++D NMP +DGL Sbjct: 3 KTILAVDDSGSLRQMVVFSLKAAGYNVTEAVDGVDALEKAKSQTFDLVLTDQNMPRMDGL 62 Query: 64 SFVREAKQKPNYKFTPVLMLTTESGDTRKQEGKAIGVRAWVHKPFLPPVLLDAVAKLV 121 + +R ++ +Y P+LMLTTE D K +GKA G W+ KPF P L + V K++ Sbjct: 63 TLIRSLRELTSYARVPILMLTTEFSDEMKAKGKAAGANGWLVKPFDPQRLTEVVRKVI 120 >gi|300311785|ref|YP_003775877.1| chemotaxis response regulator CheY [Herbaspirillum seropedicae SmR1] Length = 122 Score = 95.9 bits (237), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 50/117 (42%), Positives = 71/117 (60%), Gaps = 1/117 (0%) Query: 6 ILIVDDSFSLRQTISIALKAAGYDVVEAIDGRDALNKLDGR-KYNLIISDVNMPNLDGLS 64 IL+VDDS ++R + LK G DV A+DGRD L+KL G L++SDVNMPN+DGL+ Sbjct: 4 ILVVDDSSTVRAEVGDFLKKNGLDVALAVDGRDGLSKLKGDPAIKLVVSDVNMPNMDGLT 63 Query: 65 FVREAKQKPNYKFTPVLMLTTESGDTRKQEGKAIGVRAWVHKPFLPPVLLDAVAKLV 121 + + + ++MLTTE+ K+ GKA G++ W+ KPF +L KLV Sbjct: 64 MAEKIRSELGNASVNIIMLTTENSPIMKERGKAAGIKGWIVKPFKGEAVLPTFKKLV 120 >gi|300311034|ref|YP_003775126.1| chemotaxis response regulator protein [Herbaspirillum seropedicae SmR1] Length = 126 Score = 93.6 bits (231), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 45/107 (42%), Positives = 68/107 (63%), Gaps = 1/107 (0%) Query: 2 SPKTILIVDDSFSLRQTISIALKAAGYDVVEAIDGRDALNKLD-GRKYNLIISDVNMPNL 60 + K+I +VDDS ++ ++ L+ AG+ V A DG AL K+ G K +L+I+D+NMPN+ Sbjct: 3 TSKSIFLVDDSATMLMSVRSHLEMAGFAVDTAEDGVKALKKMQAGYKPDLLITDINMPNM 62 Query: 61 DGLSFVREAKQKPNYKFTPVLMLTTESGDTRKQEGKAIGVRAWVHKP 107 DGL +R + P ++F P+L LTTES ++ EGK G W+ KP Sbjct: 63 DGLELIRNVRALPGFRFIPILTLTTESQSGKRDEGKKAGATGWLVKP 109 >gi|300311339|ref|YP_003775431.1| CheY chemotaxis protein [Herbaspirillum seropedicae SmR1] Length = 131 Score = 76.3 bits (186), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 44/121 (36%), Positives = 67/121 (55%), Gaps = 2/121 (1%) Query: 2 SPKT-ILIVDDSFSLRQTISIALKAAGY-DVVEAIDGRDALNKLDGRKYNLIISDVNMPN 59 P T L+VDD ++R+ + LK GY +V EA DG AL KL +++ ++SD NMPN Sbjct: 3 GPNTKFLVVDDFSTMRRIVRNLLKELGYTNVDEAEDGVQALQKLRSDQFDFVVSDWNMPN 62 Query: 60 LDGLSFVREAKQKPNYKFTPVLMLTTESGDTRKQEGKAIGVRAWVHKPFLPPVLLDAVAK 119 +DGL+ ++E ++ P PVLM+T E+ G +V KPF L + + K Sbjct: 63 MDGLTMLQEIRKDPALSKLPVLMVTAEAKKENIVAAAQAGANGYVVKPFTAATLDEKLGK 122 Query: 120 L 120 + Sbjct: 123 I 123 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.136 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 362,884 Number of extensions: 13200 Number of successful extensions: 155 Number of sequences better than 1.0e-08: 22 Number of HSP's gapped: 161 Number of HSP's successfully gapped: 22 Length of query: 123 Length of database: 1,619,870 Length adjustment: 74 Effective length of query: 49 Effective length of database: 1,269,480 Effective search space: 62204520 Effective search space used: 62204520 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 125 (52.8 bits)