BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0177.p
         (277 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309957|ref|YP_003774049.1| chemotaxis histidine kinase [He...   235   3e-63
gi|300311033|ref|YP_003775125.1| chemotaxis histidine kinase [He...    59   3e-10

>gi|300309957|ref|YP_003774049.1| chemotaxis histidine kinase
           [Herbaspirillum seropedicae SmR1]
          Length = 725

 Score =  235 bits (599), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 135/262 (51%), Positives = 167/262 (63%), Gaps = 20/262 (7%)

Query: 24  ANAGAVANPNWHLSLRFSPDVLRDGLDPLSFLRYLLTMGSMVYAHVIDLAIPAADDMDAE 83
           A+  A   P WHLSL+ + +VLRDGLDPLSFL YL ++G +V    ++ AIP A  MDAE
Sbjct: 157 ADQAATRVPYWHLSLQLNENVLRDGLDPLSFLHYLRSLGRIVALVTVESAIPEAAAMDAE 216

Query: 84  LCYLGFEIGFASTAGREEIDSVFEFVREGSDIVILAPHSQLTTYGHWLQGLPERAEVALH 143
            CYLG E+  AS +  + +++VFEFVR+ S I IL P + L+ Y   L  L         
Sbjct: 217 SCYLGMEVCLASDSTLQTLENVFEFVRDDSRIDILPPRAPLSAYAERLARLAP------- 269

Query: 144 LLQSGALTAAEWRQLQL-DVAEADDLVTTEKRPGVVPSQIRAAIPAL-------RQRGGE 195
             Q  A  AA WR L L D  +   L      P      + AA+  +       R R  +
Sbjct: 270 --QDAARLAAAWRGLALFDQTQWQSLEAASATPS---DALAAAVEPMAAEGVLQRPRALD 324

Query: 196 EKKSHEQKFIKIEVSKLDQLIDLVGELVIAGAGASLVAKRKKDQRFEEATQVISGLVEQI 255
           E+++ EQKFIKIEVSKLDQLIDLVGELVIAGA A L+A+R+KD +FEEATQ I  L+EQI
Sbjct: 325 ERRAQEQKFIKIEVSKLDQLIDLVGELVIAGASARLIARRRKDSQFEEATQAIDTLMEQI 384

Query: 256 RDAALTLRMVQINEVFQRFPRV 277
           RDAALTLRMVQINEVFQRFPR+
Sbjct: 385 RDAALTLRMVQINEVFQRFPRI 406


>gi|300311033|ref|YP_003775125.1| chemotaxis histidine kinase
           [Herbaspirillum seropedicae SmR1]
          Length = 837

 Score = 59.3 bits (142), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 62/106 (58%), Gaps = 10/106 (9%)

Query: 182 IRAAIPALRQRGGE--EKKSHEQKFIKIEVSKLDQLIDLVGELVIAGAGASLVAKRKKDQ 239
           +R ++P    R G   E+     K +K+E  K+D+L++L+GE+V++      +A+R +DQ
Sbjct: 426 LRESLPEESGRAGRRAEESLSGNKSVKVEQVKIDRLMNLIGEMVVSKNALPYLAQRAEDQ 485

Query: 240 --------RFEEATQVISGLVEQIRDAALTLRMVQINEVFQRFPRV 277
                     +    VI+ + E+++DA + +RM+ ++ VFQRFPR+
Sbjct: 486 FGVRELAREIKAQYAVINRIAEEMQDAIMQVRMMPVSVVFQRFPRL 531


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.134    0.381 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 800,826
Number of extensions: 33133
Number of successful extensions: 116
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 116
Number of HSP's successfully gapped: 2
Length of query: 277
Length of database: 1,619,870
Length adjustment: 84
Effective length of query: 193
Effective length of database: 1,222,130
Effective search space: 235871090
Effective search space used: 235871090
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)