BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0175.p (213 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309957|ref|YP_003774049.1| chemotaxis histidine kinase [He... 308 2e-85 gi|300312286|ref|YP_003776378.1| signal-transducing histidine ki... 171 4e-44 gi|300313133|ref|YP_003777225.1| CheA-like histidine kinase [Her... 105 4e-24 gi|300311033|ref|YP_003775125.1| chemotaxis histidine kinase [He... 96 3e-21 gi|300312396|ref|YP_003776488.1| chemotaxis CheA protein [Herbas... 92 3e-20 >gi|300309957|ref|YP_003774049.1| chemotaxis histidine kinase [Herbaspirillum seropedicae SmR1] Length = 725 Score = 308 bits (789), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 150/207 (72%), Positives = 173/207 (83%) Query: 1 LSEREIFRLIFEPGFSTAEQVTSLSGRGVGMDVVKRNIDALQGEVEIYSNPGQGTMVCIR 60 LS+ EI+R +FEPGFSTA QVT LSGRGVGMDVV+RNI+AL GEV I + G+GT+V +R Sbjct: 513 LSDAEIYRFVFEPGFSTARQVTELSGRGVGMDVVRRNIEALHGEVSIDTGRGRGTVVRLR 572 Query: 61 LPLTLAIIAGFQVVVGGAVFVIPLDLVVECINLSSHQVHNNVVTLRDEPLPFIPLRELFD 120 LPLTLAII+GFQVVVG AVFVIPLD+VVECI++ Q +++V +RDEPLPF+PLRELFD Sbjct: 573 LPLTLAIISGFQVVVGNAVFVIPLDMVVECIDMPPQQPGSHIVNVRDEPLPFVPLRELFD 632 Query: 121 LPQRESSRKSLVIVQYGPLRAGLLVDNLLGECQAVIKPLGKLFSKVKGLSGSTILGDGRV 180 LP RE R SLVIVQYGPLRAGLLVD LLGECQAVIKPLG+LF KVKGLSGSTILGDGRV Sbjct: 633 LPARERGRNSLVIVQYGPLRAGLLVDGLLGECQAVIKPLGRLFGKVKGLSGSTILGDGRV 692 Query: 181 ALILDVPHLIAHTGRMEQAEVRRAENR 207 ALILD+ HL+ HT + EQ + R Sbjct: 693 ALILDIAHLVHHTQQQEQGSAQAYAER 719 >gi|300312286|ref|YP_003776378.1| signal-transducing histidine kinase CheA protein [Herbaspirillum seropedicae SmR1] Length = 697 Score = 171 bits (433), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 96/208 (46%), Positives = 138/208 (66%), Gaps = 7/208 (3%) Query: 1 LSEREIFRLIFEPGFSTAEQVTSLSGRGVGMDVVKRNIDALQGEVEIYSNPGQGTMVCIR 60 LS+ E+++LIFEPGFSTAEQVT +SGRGVGMDVVKRNI A+ G V+I S+ G GT + I Sbjct: 488 LSDAEVWQLIFEPGFSTAEQVTDVSGRGVGMDVVKRNILAMGGAVDIRSSKGFGTTISIS 547 Query: 61 LPLTLAIIAGFQVVVGGAVFVIPLDLVVECINLSSHQV-----HNNVVTLRDEPLPFIPL 115 LPLTLAI+ G + +G V+++PL VVE + + + V+ +R E LP IPL Sbjct: 548 LPLTLAILDGMSIRIGEEVYILPLGYVVESLQPLAQDIKEISGQGQVLRVRGEYLPLIPL 607 Query: 116 RELFDLPQR--ESSRKSLVIVQYGPLRAGLLVDNLLGECQAVIKPLGKLFSKVKGLSGST 173 ++F++ + S+ +VI++ +A L VD+L+G+ Q V+K L + KV G+SG+T Sbjct: 608 YQIFNIEPSFTDPSQGLVVILESDGKKAALFVDDLIGQQQIVVKNLESNYRKVAGISGAT 667 Query: 174 ILGDGRVALILDVPHLIAHTGRMEQAEV 201 ILGDG VALI+DV L+ + ++ V Sbjct: 668 ILGDGGVALIVDVAALLRSSRQLNDESV 695 >gi|300313133|ref|YP_003777225.1| CheA-like histidine kinase [Herbaspirillum seropedicae SmR1] Length = 744 Score = 105 bits (261), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 70/204 (34%), Positives = 110/204 (53%), Gaps = 9/204 (4%) Query: 2 SEREIFRLIFEPGFSTAEQVTSLSGRGVGMDVVKRNIDALQGEVEIYSNPGQGTMVCIRL 61 S+ + LIF+PG ST+ QV++L+GRG+GMDVV+ + AL G + ++S PGQG + L Sbjct: 533 SQARLADLIFQPGLSTSPQVSALAGRGIGMDVVRSEVAALGGWMRVHSQPGQGVQFTLYL 592 Query: 62 PLTLAIIAGFQVVVGGAVFVIPLDLVVECINLSSHQVHNNVVTLRDEP----LPFIPLRE 117 PL+LA+ + G F IP LV + L Q + E L P Sbjct: 593 PLSLAVQHVCLLRHGQQHFAIPSMLVDSIVQLRGPQARQALAERSLEHQGSRLALHPWHC 652 Query: 118 LFD---LPQRESSRKSLV-IVQYGPLRAGLLVDNLLGECQAVIKPLGKLFSKVKGLSGST 173 L D P E S + V +++ +L D++ G + V+KP+G + + G+ G+T Sbjct: 653 LLDEAPEPAGEGSDSAYVLLIKRDDGLMAVLADHVSGNREVVVKPVGPQLATLAGVVGAT 712 Query: 174 ILGDGRVALILDVPHLIAHTGRME 197 +LGDG++ LI++ P L+A GR + Sbjct: 713 VLGDGQIVLIIN-PLLLAGAGRTD 735 >gi|300311033|ref|YP_003775125.1| chemotaxis histidine kinase [Herbaspirillum seropedicae SmR1] Length = 837 Score = 95.5 bits (236), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 56/198 (28%), Positives = 108/198 (54%), Gaps = 8/198 (4%) Query: 1 LSEREIFRLIFEPGFSTAEQVTSLSGRGVGMDVVKRNIDALQGEVEIYSNPGQGTMVCIR 60 +S+++ L+F GFSTAE V+ LSGRGVGMDVV+ ++ + G + ++S G+GT + I Sbjct: 640 ISDQDAVNLVFSSGFSTAEVVSDLSGRGVGMDVVRNAVEKVNGSLALHSVSGKGTRLQIS 699 Query: 61 LPLTLAIIAGFQVVVGGAVFVIPLDLVVECINLSSHQVH----NNVVTLRDEPLPFIPLR 116 LPL++A+ + G +F +P++ V+E + + +H + + LR L + Sbjct: 700 LPLSMAVTKVMIIESDGQLFGVPMEHVMETVRVPRSSLHFANSSAKMVLRGHILGLKGIN 759 Query: 117 ELFDLPQRESSRK----SLVIVQYGPLRAGLLVDNLLGECQAVIKPLGKLFSKVKGLSGS 172 ++ + + + ++++V+ G GL++D+ + KPL + + SGS Sbjct: 760 QILGIAAEQKTNADGEVAVLVVRVGGQSVGLVIDDFRETVDVIQKPLLGILGGLSLYSGS 819 Query: 173 TILGDGRVALILDVPHLI 190 ++GDG V ++L+ + Sbjct: 820 ALMGDGSVLMVLNTREMF 837 >gi|300312396|ref|YP_003776488.1| chemotaxis CheA protein [Herbaspirillum seropedicae SmR1] Length = 638 Score = 92.0 bits (227), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 69/203 (33%), Positives = 108/203 (53%), Gaps = 6/203 (2%) Query: 1 LSEREIFRLIFEPGFSTAEQVTSLSGRGVGMDVVKRNIDALQGEVEIYSNPGQGTMVCIR 60 L+ E +L+F PGFST E +S+SGRGVGMDVVK ++ +G + I S G+GT IR Sbjct: 439 LTADEALQLVFLPGFSTKEVASSVSGRGVGMDVVKTAVEKHRGTIRIESTIGKGTKFSIR 498 Query: 61 LPLTLAIIAGFQVVVGGAVFVIPLDLVVECINLSSH--QVHNNVVTLRDEPLPFIPLREL 118 LP+ L+II V GA +P+ +V + L + +V V LRD+ P +P+ L Sbjct: 499 LPIELSIIPTMLVRCAGAPLALPMAVVERVVELPENFDEVGGAPV-LRDQGRP-LPVNSL 556 Query: 119 FDLPQRESSRKSLVIVQYGPLRAGLLVDNLLGECQAVIKPLGKLFSKVKGLSGSTILGDG 178 + E + + IV P L V+++ G VIKPL + + G++G+ +G Sbjct: 557 AGVLGYEPGNERVGIVMAVPHPYILGVESVEGTADLVIKPLTAIHT--AGITGTARSAEG 614 Query: 179 RVALILDVPHLIAHTGRMEQAEV 201 + L++ + L+ ME+ V Sbjct: 615 ELVLVVGLSFLLDGCRDMERTAV 637 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.141 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 588,241 Number of extensions: 22623 Number of successful extensions: 121 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 116 Number of HSP's successfully gapped: 7 Length of query: 213 Length of database: 1,619,870 Length adjustment: 81 Effective length of query: 132 Effective length of database: 1,236,335 Effective search space: 163196220 Effective search space used: 163196220 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)