BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0174.p (504 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309958|ref|YP_003774050.1| methyl-accepting chemotaxis tra... 593 e-170 gi|300310634|ref|YP_003774726.1| methyl-accepting chemotaxis dom... 329 4e-91 gi|300310428|ref|YP_003774520.1| methyl-accepting chemotaxis tra... 154 1e-38 gi|300310789|ref|YP_003774881.1| methyl-accepting chemotaxis tra... 139 6e-34 gi|300312531|ref|YP_003776623.1| methyl-accepting chemotaxis tra... 132 7e-32 >gi|300309958|ref|YP_003774050.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 595 Score = 593 bits (1529), Expect = e-170, Method: Compositional matrix adjust. Identities = 300/425 (70%), Positives = 357/425 (84%) Query: 1 MKNKLTQRMSIRQLFVWLVIVLAVLMGSIVSVTRALKEANTNLDLAHESRYYSFMLANEM 60 M+ +T RMSI+QLF+WL +VL++L+ +VS+T ALK+AN L+ AH+SRY S LANE+ Sbjct: 1 MRETMTHRMSIKQLFIWLALVLSILVAVVVSLTGALKDANLELERAHQSRYDSTALANEL 60 Query: 61 RRSSEDLTKFGRAYVTTGDPNDEERYYIVLDIRNGKRPRPKSYERVNLDLVMAKQLNAMP 120 RR++ED+TKF RAYVTTGDPNDE+RYY+++DIRNGKR RP +Y+R N DLV A++L P Sbjct: 61 RRTAEDMTKFARAYVTTGDPNDEDRYYMIMDIRNGKRARPSNYDRFNWDLVNARKLALDP 120 Query: 121 ADPAVPLIDLMKQAGFTTQELAKMQEAKINSDTLTKIEITAFNAVKGQFDDGAGNFTVTG 180 P VPL +LMK+AGFT +ELAKMQEA D L KIEITAF+AVKG+FDDG G +TV G Sbjct: 121 GAPGVPLGELMKRAGFTDEELAKMQEALKLGDQLAKIEITAFHAVKGEFDDGEGKYTVIG 180 Query: 181 APNQAMAQELMFDQNYRTMVGRIMVPINDFLRMVDERTQKRVSVAQNRYSELEMVIFSLL 240 APNQAMAQEL+FDQ YRT+ G++M P+NDFLR+VDERTQ V A Y+ELE IF LL Sbjct: 181 APNQAMAQELVFDQTYRTLFGKLMSPVNDFLRLVDERTQANVRQAGKDYAELEQKIFWLL 240 Query: 241 GASMLLLLVCLFFTYRVIRSQLGGEPRDAMNVLRKVAEGDLTVKVPVSQKDTGSVLHSTQ 300 AS+++L CL+ +YR+IRSQ+GGEPRDAM+VLR+VAEGDLTV VP+ + D SVL+STQ Sbjct: 241 AASVVVLFACLWLSYRIIRSQIGGEPRDAMSVLRRVAEGDLTVVVPLPKGDKLSVLYSTQ 300 Query: 301 QMIAKWTAVIGDVNGTASSLASASEQISASSQALSKNASQQASNVEETSASVEEITATIA 360 QMI KWT VIGDV+GTA+SLASASEQIS+SSQALS NA+QQA+NVEETSASVEEITATIA Sbjct: 301 QMINKWTDVIGDVSGTATSLASASEQISSSSQALSHNAAQQAANVEETSASVEEITATIA 360 Query: 361 QNAENARVTDSIASKSASAAVEGGEVVRETVLAMQQIAGKIGIIDDIAYQTNLLALNAAI 420 QNA+NAR TD IAS SASAA EGGE VRETV AM+QIA KIGIIDDIAYQTNLLALNAAI Sbjct: 361 QNADNARTTDGIASLSASAATEGGEAVRETVAAMKQIASKIGIIDDIAYQTNLLALNAAI 420 Query: 421 EAARA 425 EAARA Sbjct: 421 EAARA 425 >gi|300310634|ref|YP_003774726.1| methyl-accepting chemotaxis domain-containing protein [Herbaspirillum seropedicae SmR1] Length = 568 Score = 329 bits (843), Expect = 4e-91, Method: Compositional matrix adjust. Identities = 181/439 (41%), Positives = 269/439 (61%), Gaps = 13/439 (2%) Query: 1 MKNKLTQRMSIRQLFVWLVIVLAVLMGSIVSVTRALKEANTNLDLAHESRYYSFMLANEM 60 MK L R SIRQ+F+ L V+ VLM IV A+ + L+ A+ESRY SF+LA E+ Sbjct: 1 MKISLVSRFSIRQIFIMLTAVITVLMTLIVLAALAVDRYDARLNAANESRYASFLLATEL 60 Query: 61 RRSSEDLTKFGRAYVTTGDPNDEERYYIVLDIRNGKRPRPKSYERVNLDLVMAKQLNAMP 120 R+SS+DLT+ R YV TGDP+ E++Y +LDIRNGK+ RP+ Y R+ D V A P Sbjct: 61 RQSSDDLTRLARTYVVTGDPSYEQQYEAILDIRNGKKARPEHYGRIYWDFVAADGKAPRP 120 Query: 121 -ADPAVPLIDLMKQAGFTTQELAKMQEAKINSDTLTKIEITAFNAVKGQFDDGAGNFTVT 179 ++ V L DLM+ AGFT E+ K++EAK NSD L K E+ A N VKG + D GNFT Sbjct: 121 DSNQHVALTDLMRAAGFTAAEMGKLEEAKNNSDALVKTEVIAMNMVKGLYADAQGNFTKR 180 Query: 180 GAPNQAMAQELMFDQNYRTMVGRIMVPINDFLRMVDERTQKRVSVAQNRYSELEMVIFSL 239 P+ A A+ELM + Y +IM P+++F ++D RT ++V A+ + + + + +SL Sbjct: 181 ADPDLAQARELMHNHAYHVYKAKIMRPVDEFFALLDARTTEQVESARAQATHMATLFYSL 240 Query: 240 LGASMLLLLVCLFFTYRVIRSQLGGEPRDAMNVLRKVAEGDLTVKV-PVSQKDTGSVLHS 298 + ++++L L Y IR+ L A +V R+VA GDLT ++ P + +TG +L + Sbjct: 241 IAIALVVLACTLMLVYHAIRNPLA----HAASVARRVAHGDLTAQIDPAIKGETGELLEA 296 Query: 299 TQQMIAKWTAVIGDVNGTASSLASASEQISASSQALSKNASQQASNVEETSASVEEITAT 358 M + ++ DV A + +++ +I++ + LS QQAS++EET++S+EE+T+T Sbjct: 297 LTIMQSGLQTIVLDVRNGAQYINTSANEIASGTLDLSSRTEQQASSLEETASSMEELTST 356 Query: 359 IAQNAENARVTDSIASKSASAAVEGGEVVRETVLAM-------QQIAGKIGIIDDIAYQT 411 + QNA NAR+ +A+ ++ AV GGEVV V M ++I I +ID IA+QT Sbjct: 357 VKQNAGNARLASELANTASGVAVRGGEVVARVVDTMGAINESSKRIVDIIAVIDGIAFQT 416 Query: 412 NLLALNAAIEAARAXPGAR 430 N+LALNAA+EAARA R Sbjct: 417 NILALNAAVEAARAGEQGR 435 >gi|300310428|ref|YP_003774520.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 517 Score = 154 bits (390), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 81/185 (43%), Positives = 128/185 (69%) Query: 241 GASMLLLLVCLFFTYRVIRSQLGGEPRDAMNVLRKVAEGDLTVKVPVSQKDTGSVLHSTQ 300 G +L+LL + R + Q+GGEP D + V++++++GDL + + S++H+ Q Sbjct: 201 GGVLLILLGAGWLLTRTLLRQMGGEPGDVVTVMQRLSDGDLVQTITLKPGCRDSMMHAIQ 260 Query: 301 QMIAKWTAVIGDVNGTASSLASASEQISASSQALSKNASQQASNVEETSASVEEITATIA 360 +M+ + V+G+V G A L S +E++SA++Q+LS+ +++QA+ VE+TS ++ +I A + Sbjct: 261 KMMTRLAQVVGEVRGNADGLVSTAEEVSATAQSLSRASTEQANGVEQTSEALAQIHALLQ 320 Query: 361 QNAENARVTDSIASKSASAAVEGGEVVRETVLAMQQIAGKIGIIDDIAYQTNLLALNAAI 420 A+NAR+TD IA+ +A A + E V++ V A+QQIAGKI +IDDIAYQTNLLALNA I Sbjct: 321 STAQNARLTDQIAAAAALEARQCAETVKQMVAAIQQIAGKIAVIDDIAYQTNLLALNATI 380 Query: 421 EAARA 425 EAA A Sbjct: 381 EAAHA 385 >gi|300310789|ref|YP_003774881.1| methyl-accepting chemotaxis transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 542 Score = 139 bits (350), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 81/247 (32%), Positives = 142/247 (57%), Gaps = 7/247 (2%) Query: 191 MFDQNYRTMVGRIMVPINDFLRMVDERTQKRVSVAQNRYSELEMVIFSLLGASMLLLLVC 250 + Q R + + + +++ R DE + + A Y + ++L+ S+LL + Sbjct: 148 LLTQKIRPVQAKWLDNLDELGRFEDELNNQASAAADTTYRSILTTTWTLVAGSVLLAVAA 207 Query: 251 LFFTYRVIRSQLGGEPRDAMNVLRKVAEGDLTVKVPVSQKDTGSVLHSTQQMIAKWTAVI 310 F R + QLGGEP A + ++A+G+L V +P+++ D S++ S + M A+ T ++ Sbjct: 208 AFLIVRSVLHQLGGEPAQAQELAAQIAQGNLAVSIPLAKGDQHSLMASLENMRAQLTRIV 267 Query: 311 GDVNGTASSLASASEQISASSQALSKNASQQASNVEETSASVEEITATIAQNAENARVTD 370 + +A S+++A+ QI+ + LS+ +QA+++EET++S+EEIT+T+ QN +NA Sbjct: 268 DGIKHSAESISTAASQIAVGNLDLSRRTEEQAASLEETASSMEEITSTVEQNTQNAGQGH 327 Query: 371 SIASKSASAAVEGGEVVRETVLAMQQIAGK-------IGIIDDIAYQTNLLALNAAIEAA 423 +A ++ A +GGEVV V M+ I+ I ++ IA+QTN+LALNAA+EAA Sbjct: 328 QLARSASLHAQKGGEVVERVVGTMKDISQSAYKITEIIATVEGIAFQTNILALNAAVEAA 387 Query: 424 RAXPGAR 430 RA R Sbjct: 388 RAGEQGR 394 >gi|300312531|ref|YP_003776623.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 609 Score = 132 bits (332), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 71/182 (39%), Positives = 121/182 (66%), Gaps = 8/182 (4%) Query: 251 LFFTYRVIRSQLGGEPRDAMNVLRKVAEGDLTVKVPVSQKDTGSVLHSTQQMIAKWTAVI 310 + + ++R+ +GG+P A V ++A+GDLT + + D+ S+L++ + M + I Sbjct: 206 IVINHGILRT-IGGDPAQAAEVANRIAQGDLTPNIETAPGDSSSLLYAVRSMRDSLLSTI 264 Query: 311 GDVNGTASSLASASEQISASSQALSKNASQQASNVEETSASVEEITATIAQNAENARVTD 370 ++ +A ++ASAS++I++ + LS QQA ++EET++++EE+TAT+ QNA+NAR + Sbjct: 265 TNIKASAGTIASASQEIASGNLDLSGRTEQQAGSIEETASAMEELTATVKQNADNARQAN 324 Query: 371 SIASKSASAAVEGGEVVRETVLAMQ-------QIAGKIGIIDDIAYQTNLLALNAAIEAA 423 +A ++ A++GG VV + V M+ +IA IG+ID IA+QTN+LALNAA+EAA Sbjct: 325 QLAESASEVAIQGGSVVSQVVQTMEGITDSSRKIADIIGVIDGIAFQTNILALNAAVEAA 384 Query: 424 RA 425 RA Sbjct: 385 RA 386 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.317 0.130 0.356 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,177,799 Number of extensions: 40705 Number of successful extensions: 390 Number of sequences better than 1.0e-08: 67 Number of HSP's gapped: 300 Number of HSP's successfully gapped: 67 Length of query: 504 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 415 Effective length of database: 1,198,455 Effective search space: 497358825 Effective search space used: 497358825 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)