BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0173.p
         (114 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309958|ref|YP_003774050.1| methyl-accepting chemotaxis tra...   125   9e-31
gi|300309735|ref|YP_003773827.1| methyl-accepting chemotaxis sen...    54   2e-09
gi|300313312|ref|YP_003777404.1| methyl-accepting chemotaxis pro...    54   4e-09
gi|300310620|ref|YP_003774712.1| methyl-accepting chemotaxis tra...    52   9e-09

>gi|300309958|ref|YP_003774050.1| methyl-accepting chemotaxis
           transducer transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 595

 Score =  125 bits (314), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 73/116 (62%), Positives = 86/116 (74%), Gaps = 7/116 (6%)

Query: 1   VQEISAASREQSAGLEQINDAVHQMAQTTQLTASASEELSSTSEEMSAQAMQLQELILFF 60
           VQEI+AAS EQS GLEQIN+AVHQMAQTTQ+TASASEELS+TSEEMSAQA+ LQ+L+ FF
Sbjct: 485 VQEIAAASHEQSTGLEQINNAVHQMAQTTQMTASASEELSATSEEMSAQAIHLQDLMRFF 544

Query: 61  QVGEEKRPQSKKATNAGKMINESPAISTKFVKPARISMLDGGDD--PIDESSFKRF 114
           QVGE +    K A  A K +   P+   K     R+SMLD  +D   +DESSFKRF
Sbjct: 545 QVGEPR----KNAPRASKAVPLPPS-GGKSDSVRRLSMLDAPEDERGVDESSFKRF 595


>gi|300309735|ref|YP_003773827.1| methyl-accepting chemotaxis
           sensory transducer protein [Herbaspirillum seropedicae
           SmR1]
          Length = 567

 Score = 54.3 bits (129), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/67 (46%), Positives = 44/67 (65%)

Query: 3   EISAASREQSAGLEQINDAVHQMAQTTQLTASASEELSSTSEEMSAQAMQLQELILFFQV 62
           EISAAS EQ+ G+EQ+N A+ QM + TQ  A+  EE +S S+ +S QA +L EL+  F++
Sbjct: 456 EISAASGEQTQGIEQVNQAITQMDEVTQQNAALVEEAASASQSLSHQAQRLSELVGVFRL 515

Query: 63  GEEKRPQ 69
               R Q
Sbjct: 516 PGAARQQ 522


>gi|300313312|ref|YP_003777404.1| methyl-accepting chemotaxis
           protein I [Herbaspirillum seropedicae SmR1]
          Length = 544

 Score = 53.5 bits (127), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 29/65 (44%), Positives = 44/65 (67%)

Query: 1   VQEISAASREQSAGLEQINDAVHQMAQTTQLTASASEELSSTSEEMSAQAMQLQELILFF 60
           V EISAASREQS G+EQ+N A+  M Q+TQ  A+  EE ++ ++ +  QA QL+  +  F
Sbjct: 449 VTEISAASREQSLGIEQVNQAISHMDQSTQENAALVEEATAAAQSLQEQARQLERAVNVF 508

Query: 61  QVGEE 65
           ++ +E
Sbjct: 509 KLRQE 513


>gi|300310620|ref|YP_003774712.1| methyl-accepting chemotaxis
           transducer transmembrane protein [Herbaspirillum
           seropedicae SmR1]
          Length = 573

 Score = 52.4 bits (124), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 29/64 (45%), Positives = 40/64 (62%)

Query: 1   VQEISAASREQSAGLEQINDAVHQMAQTTQLTASASEELSSTSEEMSAQAMQLQELILFF 60
           + EISAAS EQ+AG+EQIN A+ QM   TQ  AS  EE ++ S  +  QA  L +++  F
Sbjct: 459 IGEISAASTEQTAGIEQINQAIMQMDDVTQQNASLVEEAAAASRALQDQADALAQIVSIF 518

Query: 61  QVGE 64
            +G 
Sbjct: 519 NLGH 522


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.307    0.120    0.302 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 247,447
Number of extensions: 6417
Number of successful extensions: 111
Number of sequences better than 1.0e-08: 26
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 26
Length of query: 114
Length of database: 1,619,870
Length adjustment: 73
Effective length of query: 41
Effective length of database: 1,274,215
Effective search space: 52242815
Effective search space used: 52242815
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 124 (52.4 bits)