BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0171.p
         (185 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309959|ref|YP_003774051.1| positive regulator of CheA prot...   225   2e-60
gi|300312285|ref|YP_003776377.1| CheW chemotaxis protein [Herbas...    92   4e-20
gi|300311028|ref|YP_003775120.1| chemotaxis signal transduction ...    81   5e-17

>gi|300309959|ref|YP_003774051.1| positive regulator of CheA protein
           activity protein [Herbaspirillum seropedicae SmR1]
          Length = 194

 Score =  225 bits (574), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 126/183 (68%), Positives = 152/183 (83%), Gaps = 1/183 (0%)

Query: 1   MPSLSLNGELSFARTQYQESVQSRQFLTFVLGEEMFAMPIEDIREIIEFSSLTEVPLMPS 60
           MPS+SLNGE    R Q +E V+SRQFLTF++G E FAMPI  IREIIEFS LTEVPLMP+
Sbjct: 1   MPSVSLNGESKRRRAQ-EEVVESRQFLTFLVGTESFAMPIASIREIIEFSGLTEVPLMPA 59

Query: 61  FLRGVINLRGAVVPVIDLSVRFGRAQTAVAKRTCIVIMELMQEQQGLLLGVMVDAVRAVL 120
           FLRGVINLRG+VVPVIDLSVRFGRA T VAKRTCI+IMEL Q++Q LLLGVMVDAV AVL
Sbjct: 60  FLRGVINLRGSVVPVIDLSVRFGRAPTVVAKRTCIIIMELQQDEQQLLLGVMVDAVSAVL 119

Query: 121 TVEDEKIEPPLSFGARLRADFIEGMINIKDRFVVVLDVKAVLSVDELSTLIGVAAVEELS 180
           ++  ++IEP  SFGA +RADF++ MIN+ +RF+VVLDV  VLSVDEL++L+G++A + L 
Sbjct: 120 SIGVDQIEPRPSFGAGIRADFVDAMINVNERFLVVLDVPRVLSVDELASLLGMSAEDALG 179

Query: 181 VPP 183
             P
Sbjct: 180 GGP 182


>gi|300312285|ref|YP_003776377.1| CheW chemotaxis protein
           [Herbaspirillum seropedicae SmR1]
          Length = 168

 Score = 91.7 bits (226), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 43/154 (27%), Positives = 93/154 (60%), Gaps = 4/154 (2%)

Query: 22  QSRQFLTFVLGEEMFAMPIEDIREIIEFSSLTEVPLMPSFLRGVINLRGAVVPVIDLSVR 81
              +FL F LG+E + + I  ++EI  + ++T +   P F++GV+NLRG +VP++D+ ++
Sbjct: 19  NGNEFLAFTLGKEEYGIDILKVQEIRGYEAVTRIANSPDFIKGVVNLRGIIVPIVDMRIK 78

Query: 82  FGRAQTAVAKRTCIVIMELMQEQQGLLLGVMVDAVRAVLTVEDEKIEPPLSFGARLRADF 141
           F   +    + T ++I+ +     G ++G++VD+V  V+T+  E+I+P    G    +D+
Sbjct: 79  FQLGEPTYDQFTVVIILNI----GGRVVGMVVDSVSDVITLTQEQIKPAPEMGTTFDSDY 134

Query: 142 IEGMINIKDRFVVVLDVKAVLSVDELSTLIGVAA 175
           + G+  ++ R ++++D+  ++S  E+  +  +AA
Sbjct: 135 LIGLGTLEQRMLILVDIDKLMSSAEMGLIEKLAA 168


>gi|300311028|ref|YP_003775120.1| chemotaxis signal transduction
           protein [Herbaspirillum seropedicae SmR1]
          Length = 516

 Score = 81.3 bits (199), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 51/152 (33%), Positives = 85/152 (55%), Gaps = 7/152 (4%)

Query: 14  RTQYQESVQSRQFLTFVLGEEMFAMPIEDIREIIEFSSLTEVPLMPSFLRGVINLRGAVV 73
           R   QE + +RQF+TFV G+E+FA+ +  ++EII    +  VPL P  L G+ NLRG ++
Sbjct: 16  RPSSQERIATRQFVTFVAGDEVFAVEMAPVQEIIRSPDVVRVPLAPPTLDGLANLRGKIL 75

Query: 74  PVIDLSVRFGRAQTAVAKRTCIVIMELMQEQQGLLLGVMVDAVRAVLTVEDEKIEPPLSF 133
           P++ L   FG  +      T  V++ + Q      LG +VD V +VL VE +KIE P   
Sbjct: 76  PIVSLRRIFGFPERDKDDATRAVVINVGQP-----LGFVVDRVASVLDVEADKIEAPEGL 130

Query: 134 GARLRADFIEGMINIKDRF--VVVLDVKAVLS 163
            + +  + + G++     +  ++VLD + ++S
Sbjct: 131 QSTIDTELLAGLLKNVGGYPVIMVLDFEKLVS 162



 Score = 68.2 bits (165), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 49/149 (32%), Positives = 78/149 (52%), Gaps = 8/149 (5%)

Query: 25  QFLTFVLGEEMFAMPIEDIREIIEF-SSLTEVPLMPSFLRGVINLRGAVVPVIDLSVRFG 83
           Q + F L +E F +PI  ++EI+     L  VP  P+F+ GVINLRG+V+PVIDL  R G
Sbjct: 370 QMVIFRLDKEEFGVPIHSVQEIVRVPDELVHVPGAPAFVEGVINLRGSVLPVIDLRARLG 429

Query: 84  RAQTAVAKRTCIVIMELMQEQQGLLLGVMVDAVRAVLTVEDEKIEPPLSFGARLRADFIE 143
                 +    I++  +   + G +    VD V  VL +  + IEP   F  +  A  + 
Sbjct: 430 LPAIERSDGQRIMVFVIADVRTGFI----VDQVAEVLRIAKDAIEPAPRFSTQQSA-LLA 484

Query: 144 GMINIKD--RFVVVLDVKAVLSVDELSTL 170
            M N++   R V +L+   +++ DE++ L
Sbjct: 485 RMANMEKQGRMVQLLEPAQLINADEMTGL 513


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.323    0.139    0.375 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 417,927
Number of extensions: 12081
Number of successful extensions: 49
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 4
Length of query: 185
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 105
Effective length of database: 1,241,070
Effective search space: 130312350
Effective search space used: 130312350
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 128 (53.9 bits)