BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0169.p
         (191 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300311337|ref|YP_003775429.1| chemotaxis protein [Herbaspiril...    78   5e-16
gi|300313512|ref|YP_003777604.1| chemoreceptor glutamine deamida...    71   6e-14

>gi|300311337|ref|YP_003775429.1| chemotaxis protein [Herbaspirillum
           seropedicae SmR1]
          Length = 201

 Score = 77.8 bits (190), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 52/152 (34%), Positives = 77/152 (50%), Gaps = 12/152 (7%)

Query: 10  GEVYFGQGDLQVETLLGSCVAITLWHPVRHFGGLCHFVLPERRYAVRPDANGEHLHE-TP 68
           GE YF   D+ + T+LGSCV+  +   V   GG+ HF+L        PD  G+     + 
Sbjct: 28  GEYYFTTKDMMIVTVLGSCVSACIRDRVSGIGGMNHFML--------PDGGGDDGSPVSA 79

Query: 69  DGRYGDEALSRLLEQVRQHGTRIADYTVKVFGGGNVL-GLPPTKLRIGQANADFALDILR 127
             RYG  A+  L+  V + G R  +   KVFGGGNVL G   + + +G+ NA+F    L+
Sbjct: 80  SARYGTYAMEVLINDVLKSGARRENLEAKVFGGGNVLRGF--SAINVGERNAEFVRRYLK 137

Query: 128 QHHIPVTAQDVAGEGYRYLRFDLNNGDVWVRR 159
             +I V A+D+     R + F    G V V++
Sbjct: 138 AENIRVVAEDLNDIYPRKVYFFPRTGKVLVKK 169


>gi|300313512|ref|YP_003777604.1| chemoreceptor glutamine deamidase
           [Herbaspirillum seropedicae SmR1]
          Length = 203

 Score = 71.2 bits (173), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 52/154 (33%), Positives = 75/154 (48%), Gaps = 16/154 (10%)

Query: 10  GEVYFGQGDLQVETLLGSCVAITLWHPVRHFGGLCHFVLPERRYAVRPDANGEHLHETP- 68
           GE ++   D+ + T+LGSCV+  L   V   GG+ HF+L        PD  GE   ++P 
Sbjct: 31  GEYFYTGEDMMIVTVLGSCVSACLRDRVSGVGGMNHFML--------PDGGGE--ADSPV 80

Query: 69  --DGRYGDEALSRLLEQVRQHGTRIADYTVKVFGGGNVL-GLPPTKLRIGQANADFALDI 125
               RYG  A+  L+  V + G R  +   KVFGGG VL G+    + +G+ NA F    
Sbjct: 81  SASMRYGTYAMEVLINDVLKAGARRENLECKVFGGGAVLRGM--NAMNVGERNAAFVRSF 138

Query: 126 LRQHHIPVTAQDVAGEGYRYLRFDLNNGDVWVRR 159
           L    I V A+D+     R + F    G V V++
Sbjct: 139 LSAEKIRVVAEDLNDIWPRKVHFFPRTGKVLVKK 172


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.322    0.141    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 716,932
Number of extensions: 33136
Number of successful extensions: 81
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 2
Length of query: 191
Length of database: 1,619,870
Length adjustment: 80
Effective length of query: 111
Effective length of database: 1,241,070
Effective search space: 137758770
Effective search space used: 137758770
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 128 (53.9 bits)