BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0162.p
         (239 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309966|ref|YP_003774058.1| DnaA regulatory inactivator Hda...   291   4e-80

>gi|300309966|ref|YP_003774058.1| DnaA regulatory inactivator Hda
           protein [Herbaspirillum seropedicae SmR1]
          Length = 238

 Score =  291 bits (744), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 153/240 (63%), Positives = 182/240 (75%), Gaps = 11/240 (4%)

Query: 1   MRQLLLDLSAQQPPTFDTFVTGQNAELLQRLQDIA-AGQAQPT-----LNDRFIYLWGET 54
           M+Q+ LDLSA QP +FD+FVTG+NAELL+RL+ +A AG  Q T       DRF+YLW E 
Sbjct: 1   MKQIPLDLSADQPQSFDSFVTGRNAELLERLKLLATAGVDQSTQTGSASTDRFLYLWAEA 60

Query: 55  GAGKTHLLHSVLHSLAPAGAQGGAIGSRLIPADADDSAFDYDPAIQCYLLDDCEQLPPAS 114
           GAGKTHLL ++   +A  G Q     +RLI AD+ D+AFDY P I  YLLDD +QL    
Sbjct: 61  GAGKTHLLQALATRVAQEGRQ-----ARLIRADSPDAAFDYSPQITHYLLDDVDQLFEEQ 115

Query: 115 QIAAFALFNQIRELGGYLVSAGAQPPAQLEVREDLRTRLGWGLIYQLHGLTDDEKIAALT 174
           QIAAF LFNQIRE GG++V +G  PP +LE+REDLRTRLGWGLIYQ+H L+DDEKIAAL 
Sbjct: 116 QIAAFNLFNQIREQGGWMVCSGTLPPTRLELREDLRTRLGWGLIYQVHDLSDDEKIAALL 175

Query: 175 QSAQARGMTISPGILSYLLTHYRRDMPSLSRMLDALDRYSLETKRPITLPLLRDLLQQEA 234
           Q    RG+ I P ++ Y+LTHYRRDMPSLSRMLDALDRYSL TKR ITLPLLR+LLQQE+
Sbjct: 176 QITLDRGLEIPPAVMMYMLTHYRRDMPSLSRMLDALDRYSLATKRAITLPLLRELLQQES 235


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.136    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 801,295
Number of extensions: 35765
Number of successful extensions: 144
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 142
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 1,619,870
Length adjustment: 82
Effective length of query: 157
Effective length of database: 1,231,600
Effective search space: 193361200
Effective search space used: 193361200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)