BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0160.p
         (364 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309968|ref|YP_003774060.1| phosphoribosylformylglycinamidi...   635   0.0  

>gi|300309968|ref|YP_003774060.1| phosphoribosylformylglycinamidine
           cyclo-ligase [Herbaspirillum seropedicae SmR1]
          Length = 347

 Score =  635 bits (1639), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 323/347 (93%), Positives = 334/347 (96%)

Query: 18  MTSSSNVSLSYRDAGVDIDAGDALVEAIKPFAKRTTREGVLGGIGGFGALFEISKKFKEP 77
           MTS SNVSLSYRDAGVDIDAGDALVEAIKPFAKRTTREGVLGGIGGFGALFEISKK+KEP
Sbjct: 1   MTSPSNVSLSYRDAGVDIDAGDALVEAIKPFAKRTTREGVLGGIGGFGALFEISKKYKEP 60

Query: 78  VLVSGTDGVGTKLKLAFLLNKHDTVGIDLVAMSVNDILVQGAEPLFFLDYFACGKLDVAS 137
           VLVSGTDGVGTKLKLAF LN+HDTVGIDLVAMSVNDILVQGAEPLFFLDYFACGKLDV S
Sbjct: 61  VLVSGTDGVGTKLKLAFHLNRHDTVGIDLVAMSVNDILVQGAEPLFFLDYFACGKLDVPS 120

Query: 138 ATDVIKGIAKGCEQAGCALIGGETAEMPSMYPDGEYDLAGFAVGAVEKSKLIDGTKIIPG 197
           ATDVIKGIA GCEQAGCALIGGETAEMPSMYPDGEYDLAGFAVGAVEKSK+IDGTKI PG
Sbjct: 121 ATDVIKGIAAGCEQAGCALIGGETAEMPSMYPDGEYDLAGFAVGAVEKSKIIDGTKIAPG 180

Query: 198 DVVLGLASSGAHSNGYSLVRKILEVAKPDLNADFHGRKLADVLLEPTRIYVKPLLALMES 257
           DVVLGLASSGAHSNGYSLVRKIL+VAKPDL ADFHGRKLADVL+ PTRIYVKPLL+LME 
Sbjct: 181 DVVLGLASSGAHSNGYSLVRKILDVAKPDLEADFHGRKLADVLMAPTRIYVKPLLSLMEK 240

Query: 258 MEVKGMVHITGGGLVENIPRVLQDNLTAVLDSKAWTMPPLFTWLQQHGGVADAEMHRVFN 317
           +EVKGMVHITGGGLVENIPRVLQD+LTA LD+K+WTMPPLFTWLQQHGGVADAEMHRVFN
Sbjct: 241 LEVKGMVHITGGGLVENIPRVLQDHLTAELDAKSWTMPPLFTWLQQHGGVADAEMHRVFN 300

Query: 318 CGIGMTVIVSKENAAAAEAQLKAAGETVFRIGEIRARAEGEAQTIVE 364
           CGIGMTVIVSKENA AAEA LKAAGETV+RIG IRARAEGEAQTIV 
Sbjct: 301 CGIGMTVIVSKENADAAEAHLKAAGETVYRIGAIRARAEGEAQTIVR 347


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.318    0.137    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,024,102
Number of extensions: 39725
Number of successful extensions: 117
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 117
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 1,619,870
Length adjustment: 86
Effective length of query: 278
Effective length of database: 1,212,660
Effective search space: 337119480
Effective search space used: 337119480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 131 (55.1 bits)