BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0151.p
         (459 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309975|ref|YP_003774067.1| transglutaminase-like superfami...   848   0.0  

>gi|300309975|ref|YP_003774067.1| transglutaminase-like superfamily
            domain-containing protein [Herbaspirillum seropedicae
            SmR1]
          Length = 1128

 Score =  848 bits (2192), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 401/459 (87%), Positives = 429/459 (93%)

Query: 1    VLMEGYEPPNDPRVRKFSVTPDPGVIEVNIQPAYNWRELVDQTTHLYEAGRESRLTTEKF 60
            VL+EGYEPP+DPR+RKFSVTPDPGVIEVNIQPA NW ELV+QTTHLY+A R SRLTTEKF
Sbjct: 670  VLLEGYEPPHDPRLRKFSVTPDPGVIEVNIQPANNWSELVEQTTHLYDAARASRLTTEKF 729

Query: 61   MLDGHHSGTGGGNHMVMGGATTADSPFLRRPDLLRSLISYWYNHPSLSYLFSGMFIGPTS 120
            MLDGHHSGTGGGNHMV+GG TT+DSPFLRRPDLLRSLISYW+NHPSLSYLFSGMFIGPTS
Sbjct: 730  MLDGHHSGTGGGNHMVLGGITTSDSPFLRRPDLLRSLISYWHNHPSLSYLFSGMFIGPTS 789

Query: 121  QAPRIDEARNDSTVEIELAFAEMEKQIAQGGCAPWLVDRLLRNLLIDVTGNTHRAEFCID 180
            QAPRIDEARNDSTVEIELAF EM+KQ+A+G C PWLVDRLLRNLLIDVTGNTHRAEFCID
Sbjct: 790  QAPRIDEARNDSTVEIELAFNEMDKQVARGDCPPWLVDRLLRNLLIDVTGNTHRAEFCID 849

Query: 181  KLYSPDSSTGRLGLLELRAFEMPPHARMSLTQQLLLRALVARFWKTPYKPQRLVRWGTEL 240
            K+YSPDS+TGRLGLLELRAFEMPPHARMSLTQQLLLR LVARFWK PYKP RLVRWGTEL
Sbjct: 850  KMYSPDSATGRLGLLELRAFEMPPHARMSLTQQLLLRGLVARFWKQPYKPARLVRWGTEL 909

Query: 241  HDRFLLPHFIWQDFNDIMDDMQEAGYPMQAEWFAPHFEFRFPKIGDLAVKGMQLELRTAL 300
            HDRFLLPHFI QDF D+M DM EAGYPM+AEWFAPH EFR PKIGD AVKGMQ+ELRTAL
Sbjct: 910  HDRFLLPHFIEQDFADVMADMNEAGYPMRAEWFAPHMEFRCPKIGDYAVKGMQIELRTAL 969

Query: 301  EPWHVLGEEGSSTGTARYVDSSVERLEVKVSGMAKDRYVLTCNGVAVPLQPTGVVGEFVT 360
            EPWHVLGEE S  GTARYVDSS+ERL+VK+SGMA DRYVLTCNGV+VPLQPTG VG+FV 
Sbjct: 970  EPWHVLGEESSGGGTARYVDSSLERLQVKISGMASDRYVLTCNGVSVPLQPTGTVGQFVA 1029

Query: 361  GVRYRAWQPPSALHPTIGIDSPLTFDLVDTWNGRSLGGCQYHVVHPGGRGYETFPVNAFE 420
            GVRYRAWQPPSALHPTI +DSPLTFDLVDTWNGRSLGGCQYHVVHPGGR YETFPVNAFE
Sbjct: 1030 GVRYRAWQPPSALHPTIPVDSPLTFDLVDTWNGRSLGGCQYHVVHPGGRNYETFPVNAFE 1089

Query: 421  AESRRLTRYLRLNHTPGKMEVSAARPSIEFPFTLDLRHY 459
            AESRRL RY R+NHTPGK++V+ AR SIEFPFTLDLR++
Sbjct: 1090 AESRRLARYFRMNHTPGKLQVTPARASIEFPFTLDLRYF 1128


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.138    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,537,223
Number of extensions: 66687
Number of successful extensions: 127
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 127
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 1,619,870
Length adjustment: 88
Effective length of query: 371
Effective length of database: 1,203,190
Effective search space: 446383490
Effective search space used: 446383490
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)