BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0150.p (521 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309976|ref|YP_003774068.1| hypothetical protein Hsero_0641... 703 0.0 gi|300309971|ref|YP_003774063.1| hypothetical protein Hsero_0636... 238 1e-63 >gi|300309976|ref|YP_003774068.1| hypothetical protein Hsero_0641 [Herbaspirillum seropedicae SmR1] Length = 833 Score = 703 bits (1814), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/483 (72%), Positives = 391/483 (80%), Gaps = 23/483 (4%) Query: 1 MYQRLLQSYTADADRYDEMLAADGRLRPHWRTLIDQLENLSPEMMRRRADEVRDAIASDG 60 M QRLL+SY +DRYDEMLAADGRLRPHWRTLIDQLENLSP+M+RRRA+EVRDAIASDG Sbjct: 1 MPQRLLESYPVASDRYDEMLAADGRLRPHWRTLIDQLENLSPDMLRRRANEVRDAIASDG 60 Query: 61 MTYNVYADPQGVSRPWELDLVPQIVAADEWRQLSAAVAQRARLLNAVLDDLYGEQHLLAE 120 +TYNVYADP+G +RPWELDL+P +V+++EW L AV QRARL+N +L D+YG Q L+AE Sbjct: 61 VTYNVYADPKGANRPWELDLLPHLVSSEEWDFLERAVGQRARLMNGLLSDIYGPQTLIAE 120 Query: 121 GLLPPALVFGQHGYLWPCRDVRPPGGVHLHLYAIDLARSADGNWWVIADRTQGPSGTGYA 180 GLLPPALVFGQHGYL PC +PPGGVHLH YAIDLARS DG WWV++DRTQGPSGTGYA Sbjct: 121 GLLPPALVFGQHGYLMPCHGWQPPGGVHLHAYAIDLARSVDGTWWVVSDRTQGPSGTGYA 180 Query: 181 LQNRQIMTRALPEAMRDMHVQPLLNYFHALHQCLMRLAPKSSEPPMVVLLTPGPYNETYS 240 LQNRQIM RA+PEA+RDMHV+ YFH L L RLAP E P++VLLTPGPYNETYS Sbjct: 181 LQNRQIMARAMPEALRDMHVESPHRYFHTLRAMLTRLAPAQGEVPLIVLLTPGPYNETYS 240 Query: 241 EHAFLA----XPYNE-----TYSEHAF--------RARAIMRRLDDDYCDPLELRSDSAL 283 EHAFLA P E E F R AI+RR+DDDYCDPLELR+DSAL Sbjct: 241 EHAFLAHTLGFPLVEGVDLTVRGEQVFLKTLNGLRRVHAILRRMDDDYCDPLELRADSAL 300 Query: 284 GIPGLTQAARSGNVLIANALGSGVLESTALHGFLPAISQRLLGEELALPAVASWWCGEKP 343 G+PGLTQAAR GNVLIAN+LGSGVLESTALHGFLPAI++RL GE L LP+VASWWCGEKP Sbjct: 301 GVPGLTQAARLGNVLIANSLGSGVLESTALHGFLPAINERLYGEPLLLPSVASWWCGEKP 360 Query: 344 ALEYTLAHLEELVIMPAFPSMRMQPVFGHTLNAAARRRLVESLQLQPHAYVAQEWVRLSQ 403 AL+YTLAH +ELVI+PAF SMRMQPVFGH++ AARRRL+ESLQLQPHAY AQEWVRLSQ Sbjct: 361 ALDYTLAHFDELVIVPAFSSMRMQPVFGHSVTGAARRRLIESLQLQPHAYAAQEWVRLSQ 420 Query: 404 APVLSRSGEYHLTNRTVSLRVFAAADGEGGYHVMPGGLTEFNXGATPAPRRRLDAAGRHQ 463 APV+SRSG+Y L NRT+SLRVFA ADGEGGY VMPGGLT APR+R D Q Sbjct: 421 APVMSRSGDYRLMNRTISLRVFAVADGEGGYQVMPGGLTRV------APRQRRDVVSMQQ 474 Query: 464 QGC 466 G Sbjct: 475 GGT 477 >gi|300309971|ref|YP_003774063.1| hypothetical protein Hsero_0636 [Herbaspirillum seropedicae SmR1] Length = 475 Score = 238 bits (606), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 144/453 (31%), Positives = 230/453 (50%), Gaps = 35/453 (7%) Query: 16 YDEMLAAD-----GRLRPHWRTLIDQLENLSPEMMRRRADEVRDAIASDGMTYNVYADPQ 70 +DEM + + ++R H+ + L S E + R+ E G+T+ VY + Sbjct: 5 FDEMYSGESHGNEAQVRQHYAEFANWLSAQSAETIARKRAESDLIFRRVGITFAVYGNDA 64 Query: 71 GVSRPWELDLVPQIVAADEWRQLSAAVAQRARLLNAVLDDLYGEQHLLAEGLLPPALVFG 130 G R D++P+I+ EW +L A + QR R LN + D+Y EQ ++ G++PP +F Sbjct: 65 GTERLIPFDIIPRIIHKAEWARLEAGLVQRVRALNMFIHDIYHEQKIVKAGIIPPEQIFQ 124 Query: 131 QHGYLWPCRDVRPPGGVHLHLYAIDLARSADGNWWVIADRTQGPSGTGYALQNRQIMTRA 190 Y +DV ++ H+ +D+ R+ +G ++V+ D + PSG Y L+NR++M R Sbjct: 125 NAQYRREMQDVNVVNDIYAHIAGVDIVRAGEGEFYVLEDNLRVPSGVSYMLENRKMMMRL 184 Query: 191 LPEAMRDMHVQPLLNYFHALHQCLMRLAPKSSEPPMVVLLTPGPYNETYSEHAFLAXPY- 249 P+ + P+ +Y L L +AP P VV++TPG YN Y EHAFLA Sbjct: 185 FPDLFTRHKIAPVDHYPDLLLDNLRSVAPAGVTDPTVVVMTPGMYNSAYFEHAFLAQQMG 244 Query: 250 -------------NETY---SEHAFRARAIMRRLDDDYCDPLELRSDSALGIPGLTQAAR 293 N Y + R I RR+DDD+ DPL R DSALG+PGL QA R Sbjct: 245 VELVEGQDLFVKDNVVYMRTTRGPKRVDVIYRRIDDDFLDPLAFRPDSALGVPGLLQAYR 304 Query: 294 SGNVLIANALGSGVLESTALHGFLPAISQRLLGEELALPAVASWWCGEKPALEYTLAHLE 353 +G V + NA+G+GV + +++ ++P + + L E+ L V ++ C +K L YTLA+LE Sbjct: 305 AGKVTLTNAIGTGVADDKSIYPYVPDMVRFYLSEDPILNNVPTYQCRKKEDLSYTLANLE 364 Query: 354 ELVIMPAFPSMRMQPVFGHTLNAAARRRLVESLQ----LQPHAYVAQEWVRLSQAPVLSR 409 +LV+ + +G + A+ R+ +E + +P Y+AQ + LS P Sbjct: 365 KLVV----KEVHGAGGYGMLVGPASTRQEIEDFRARIIAKPDGYIAQPTLALSVCPTYVE 420 Query: 410 SGEYHLTNRTVSLRVFAAADGEGGYHVMPGGLT 442 SG + R + LR F + + ++ GGLT Sbjct: 421 SG---IAPRHLDLRPFVLSGKQ--ITMVKGGLT 448 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.136 0.425 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,695,622 Number of extensions: 73919 Number of successful extensions: 229 Number of sequences better than 1.0e-08: 2 Number of HSP's gapped: 225 Number of HSP's successfully gapped: 2 Length of query: 521 Length of database: 1,619,870 Length adjustment: 90 Effective length of query: 431 Effective length of database: 1,193,720 Effective search space: 514493320 Effective search space used: 514493320 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 133 (55.8 bits)