BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0149.p
         (254 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309976|ref|YP_003774068.1| hypothetical protein Hsero_0641...   319   1e-88
gi|300309970|ref|YP_003774062.1| hypothetical protein Hsero_0635...    59   5e-10

>gi|300309976|ref|YP_003774068.1| hypothetical protein Hsero_0641
           [Herbaspirillum seropedicae SmR1]
          Length = 833

 Score =  319 bits (818), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 154/215 (71%), Positives = 181/215 (84%), Gaps = 1/215 (0%)

Query: 1   VSSHAGENLFWMGRYAERTDNLARLLRTTLQCTIEPQSDNRVILRSVSEIGIRLGILMPK 60
           VSSH+GENLFWMGRY+ER  NLARLLRTTLQ T++ Q+++R +L SVS I  +LG+ MPK
Sbjct: 513 VSSHSGENLFWMGRYSERVKNLARLLRTTLQYTMDGQTESRGMLGSVSWICSQLGVQMPK 572

Query: 61  SEQAHPTITALQQSLQAAISDPSAAVSISTHLRHLHHSGYQVREHLSLDNWHALNRMPPM 120
           S+   PTIT LQQSLQAA+ DPSA VS++T LR L ++ YQVREHLSLDNWHAL +MP M
Sbjct: 573 SD-PRPTITGLQQSLQAAVVDPSAPVSVATQLRQLANAAYQVREHLSLDNWHALTKMPAM 631

Query: 121 VQEKINSPTAMLHVLNNVIQGCSGLAGHALDDMTRDEGWQFLMIGRHIERMVHLAALFDQ 180
           VQE+IN+P A  HVL NVI  CSGLAGHALDDMTRD GWQFLM+GRHIERM ++AALFD 
Sbjct: 632 VQERINTPAAAQHVLGNVIDACSGLAGHALDDMTRDAGWQFLMVGRHIERMANMAALFDN 691

Query: 181 FMQLEPARQNAALTWLLESSSSIVTYRVRYRRTPE 215
           F++L P RQ AAL+WLLE++SSIVTYRVRYRRTPE
Sbjct: 692 FLRLPPQRQTAALSWLLEAASSIVTYRVRYRRTPE 726



 Score = 60.8 bits (146), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 27/36 (75%), Positives = 32/36 (88%)

Query: 219 RLIQLMREARSAGFSLTDDLSRHFFTPLSAPVSQGV 254
           RL QLMR+A S G+ L+DDLSRH+FTPL+APVSQGV
Sbjct: 798 RLTQLMRDAVSGGYMLSDDLSRHYFTPLTAPVSQGV 833


>gi|300309970|ref|YP_003774062.1| hypothetical protein Hsero_0635
           [Herbaspirillum seropedicae SmR1]
          Length = 333

 Score = 58.5 bits (140), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 50/187 (26%), Positives = 84/187 (44%), Gaps = 20/187 (10%)

Query: 3   SHAGENLFWMGRYAERTDNLARLLRTTLQCTIEPQSDNRVILRSVSEIGIR--LGI--LM 58
           S   ++LFWM RY ER +N AR+L   +Q  + PQS +       +E G R  LGI  L+
Sbjct: 3   SRTADHLFWMARYTERAENTARMLDVHVQTALLPQSTDD------AEQGWRAVLGISELL 56

Query: 59  PKSEQAHPTITALQQSLQAAISDPSAAVSISTHLRHLHHSGYQVREHLSLDNWHALN--- 115
               Q +  +T  +  +   + DP+   SI++ LR    +   VR  L+ + W   N   
Sbjct: 57  YGYNQKYDKLTQ-KDVIDFMVRDPNNPSSIASCLRQARENARAVRGALTTEAWEIQNATW 115

Query: 116 -RMPPMVQEKI--NSPTAMLHVLNNVIQGCSGLAGHALDDMTRDEGWQFLMIGRHIERMV 172
            +M   +Q      +P+     + +      G+    +  M  DE + F+ +G  +ER  
Sbjct: 116 IKMQSYLQTNALEQNPSDFFEWVKHRSHLSRGV---TIGTMLEDEAFHFIRLGTFLERAD 172

Query: 173 HLAALFD 179
           + A + D
Sbjct: 173 NTARIID 179


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.321    0.132    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 773,750
Number of extensions: 29003
Number of successful extensions: 103
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 3
Length of query: 254
Length of database: 1,619,870
Length adjustment: 83
Effective length of query: 171
Effective length of database: 1,226,865
Effective search space: 209793915
Effective search space used: 209793915
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)