BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0148.p
         (401 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309978|ref|YP_003774070.1| membrane transport protein [Her...   667   0.0  

>gi|300309978|ref|YP_003774070.1| membrane transport protein
           [Herbaspirillum seropedicae SmR1]
          Length = 683

 Score =  667 bits (1722), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 321/395 (81%), Positives = 361/395 (91%), Gaps = 3/395 (0%)

Query: 1   MESDKSFFWRLTRYYSWYTVGFILFLLVLAVLEHEGMPRAWIGYLFMFVTIALYAGIGVV 60
           MES+K FF RL RYY +YT+GFI FL VLA+LE EGMPR WIGYLF+FVTI LYAGIGVV
Sbjct: 1   MESNKDFFRRLCRYYGFYTLGFIAFLCVLAILEREGMPRTWIGYLFLFVTIGLYAGIGVV 60

Query: 61  SRTSDVPEYYVAGRRVPALFNGMATAADWISAATFISLAGGLYLQGFDGLAYIMGWTGGY 120
            RTSDVPEYYVAGRRVP LFNGMATAADWISAATFISLAGGLYLQGFDGLAYI+GWTGGY
Sbjct: 61  CRTSDVPEYYVAGRRVPPLFNGMATAADWISAATFISLAGGLYLQGFDGLAYILGWTGGY 120

Query: 121 CLVALLIAPYLRKFGQYTIPDFLAERYPGRYSG---NLVRILAVIATIIISFTYVVAQIY 177
           CLVALLIAPYLRKFGQYTI DFLA RYPGR      N++RILAV ATI+ISFTYVVAQIY
Sbjct: 121 CLVALLIAPYLRKFGQYTIADFLAARYPGRPGSQGVNVIRILAVAATILISFTYVVAQIY 180

Query: 178 GVGLITSRFTGIDFSIGIFLGLASILVCSFLGGMRAITWTQVAQYIIILFAYLIPVIWLS 237
           GVGLITSRFTGIDFSIGIFLGLASILVCSFLGGMRAITWTQVAQYIIIL AYLIPVIWLS
Sbjct: 181 GVGLITSRFTGIDFSIGIFLGLASILVCSFLGGMRAITWTQVAQYIIILLAYLIPVIWLS 240

Query: 238 AKHTSVPVPQVAYGSVLPKLNAAEKRIADDPKEKEVSAIFQAHADDYEKKLRSLPRSWEE 297
           AKHT+VPVP VAYG+VLPKL+A E+R+ DDPKEKE+  IFQA ADDYE+KLR+LP+SW +
Sbjct: 241 AKHTTVPVPPVAYGAVLPKLSAIEQRLEDDPKEKEIRKIFQARADDYERKLRNLPQSWVD 300

Query: 298 GRIDAQHHIEEVKRNSHASLAEIKSASRALTAYPKSAEDAERKWTDAKAYNIARAQPPVS 357
           GR++A  + ++V+R++HASLAEIK+ASRAL++YPKS E+AERKWT+A+A N+ARAQPPVS
Sbjct: 301 GRLEAHTNADQVRRDNHASLAEIKAASRALSSYPKSPEEAERKWTEARAANLARAQPPVS 360

Query: 358 QTEPFPGKDEGAANIKRNNFLALVFCLMVGTAALP 392
           QTEPFPG+D+ +++IKRNNFLALVFCLM+GTAALP
Sbjct: 361 QTEPFPGRDQESSDIKRNNFLALVFCLMLGTAALP 395


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.324    0.138    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 1,287,722
Number of extensions: 55793
Number of successful extensions: 241
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 239
Number of HSP's successfully gapped: 2
Length of query: 401
Length of database: 1,619,870
Length adjustment: 87
Effective length of query: 314
Effective length of database: 1,207,925
Effective search space: 379288450
Effective search space used: 379288450
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 132 (55.5 bits)