BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0146.p (515 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309980|ref|YP_003774072.1| two component transmembrane sen... 630 0.0 gi|300313819|ref|YP_003777911.1| two component sensor histidine ... 295 8e-81 gi|300312679|ref|YP_003776771.1| periplasmic sensor signal trans... 253 2e-68 gi|300312689|ref|YP_003776781.1| transmembrane sensor kinase tra... 219 3e-58 gi|300314014|ref|YP_003778106.1| two component sensor histidine ... 208 7e-55 >gi|300309980|ref|YP_003774072.1| two component transmembrane sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 390 Score = 630 bits (1626), Expect = 0.0, Method: Compositional matrix adjust. Identities = 320/390 (82%), Positives = 347/390 (88%), Gaps = 6/390 (1%) Query: 130 MPQPPLDEDK-TIGSVQFRNDILHGNDVRIAYTQVDLRRTSEQRAASSKEPRLATVQVGE 188 MPQPP DED+ T+G+VQFRNDILHG+DVRIA QVDLRR++ QRAAS +EPRLATVQVGE Sbjct: 1 MPQPPPDEDRSTVGTVQFRNDILHGSDVRIATLQVDLRRSAAQRAAS-REPRLATVQVGE 59 Query: 189 TLEKRAQLANEIIKGVILPQFVILPVALALVWFALSRGLSPLSELQQRIRARRPDDLSPI 248 TLEKRAQLANEIIKGVILPQF+ILPVALALVWFALSRGLSPLSELQQRIRARRPDDLSPI Sbjct: 60 TLEKRAQLANEIIKGVILPQFIILPVALALVWFALSRGLSPLSELQQRIRARRPDDLSPI 119 Query: 249 DSGQVPEEISPLVRSLNDMLARLSQTIALQKRFIADAAHQMKTPLAGMRMQSELALRQTD 308 DSGQVPEEISPLVRSLNDMLARLSQTIA+QKRFIADAAHQMKTPLAGMRMQSELALRQ D Sbjct: 120 DSGQVPEEISPLVRSLNDMLARLSQTIAIQKRFIADAAHQMKTPLAGMRMQSELALRQDD 179 Query: 309 QADIHRSLEQLAKSSESATRLVNQLLSLARAENQTPATAPFEPIELSELARNVVQDWVPM 368 Q D+ RSLEQLAKSSE+ATRLVNQLLSLARAENQ + P+EL+ELAR+VVQDWVPM Sbjct: 180 QVDVRRSLEQLAKSSETATRLVNQLLSLARAENQQSQSGGMIPVELNELARSVVQDWVPM 239 Query: 369 SFTQRIDLGFEQPGHPIMISGNPIMLRELLSNLLDNALHYTP--ALGSVTVRARADEETG 426 SFTQRIDLGFEQP HPI+I+GNP+MLRELLSNLLDNALHYTP G VTVRAR DE G Sbjct: 240 SFTQRIDLGFEQPDHPILITGNPVMLRELLSNLLDNALHYTPHDGNGRVTVRARTDEGGG 299 Query: 427 QAFLEVEDTGPGIAPTERGHVFERFYRILGTHTAGS--GLGLAIVREIAQQHEATVDISN 484 A LEVED GPGI ER +VFERFYRILGT + GS GLGLAIVREIAQQHEA ++I++ Sbjct: 300 LAILEVEDNGPGIPVAERANVFERFYRILGTPSTGSGLGLGLAIVREIAQQHEAALEITS 359 Query: 485 NPRSTDPKAPGCLFRVTLRMTPRQTYMDDI 514 NPRSTDPK PGC+FRV+ RM PR + DDI Sbjct: 360 NPRSTDPKYPGCVFRVSFRMMPRTPFFDDI 389 >gi|300313819|ref|YP_003777911.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 485 Score = 295 bits (754), Expect = 8e-81, Method: Compositional matrix adjust. Identities = 183/463 (39%), Positives = 263/463 (56%), Gaps = 24/463 (5%) Query: 34 SLFGEILDWMLAPLLLLWPMSIAITYLIAQSIANQPFDRALEDSVTVLAQQVSEVNGKTV 93 SL +++ W+L PL LL + Y A +A+ +DR+L S LA++VS V+G Sbjct: 10 SLRSQLVRWLLIPLTLLVAVDAVSVYYNALEVADLAYDRSLLASTRALAERVSVVDGHVT 69 Query: 94 ARLPVSARDLLRADDIDNIYFQITGPRGEFVEGDRDMPQPPLDEDKTI---GSVQFRNDI 150 A +P A D D++ IY+++TG GE V G D+P P D ++ V+F Sbjct: 70 ADVPYVALDSFETDNLGRIYYKVTGLNGELVSGYDDLPPVPPDVKRSEVYPALVRFYQAD 129 Query: 151 LHGNDVRIAYTQVDLRRTSEQRAASSKEPRLATVQVGETLEKRAQLANEIIKGVILPQFV 210 H VRIA Q +A +QVGET+E R + +I+ + Q Sbjct: 130 YHDQPVRIAALL--------QPVYDDSIRGIALIQVGETMEGRNGMTRKILFDTLWRQGT 181 Query: 211 ILPVALALVWFALSRGLSPLSELQQRIRARRPDDLSPIDSGQVPEEISPLVRSLNDMLAR 270 ++ VA LVWFA+ L PL +L+ + +R P DLS D+ V +E+ PLV+++N + R Sbjct: 182 LVTVAALLVWFAVRFVLRPLMQLKGEVESRAPTDLSGFDTALVHKEMRPLVQAMNGYMGR 241 Query: 271 LSQTIALQKRFIADAAHQMKTPLAGMRMQSELALR-----QTDQADIHRSLEQLAKSSES 325 L I+ Q+RFIADA+HQ++TPL ++ QSEL LR Q D A++ +E +A+++++ Sbjct: 242 LQALISAQRRFIADASHQLRTPLTVLKTQSELTLRELRREQVDAAELRDLVEGMARTTDA 301 Query: 326 ATRLVNQLLSLARAENQTPATAPFEPIELSELARNVVQDWVPMSFTQRIDLGFEQPGHPI 385 A L N+LL+LARAE+ A P+ LS+ AR V + + ++ I L FE+ G + Sbjct: 302 AVHLANRLLTLARAEHGA-AEGGTMPLSLSDAARQVALELSQQAVSREIGLAFEEEGD-V 359 Query: 386 MISGNPIMLRELLSNLLDNALHYTPALGSVTVRARADEETGQ---AFLEVEDTGPGIAPT 442 I N ++L EL+ NLLDNA+ YTPA G VT+R RA GQ A LEVED+GPGI Sbjct: 360 SIEANALLLHELMVNLLDNAIRYTPAGGHVTLRVRAQSSPGQPTVALLEVEDSGPGIPAA 419 Query: 443 ERGHVFERFYRILGTHT---AGSGLGLAIVREIAQQHEATVDI 482 ER VFE FYR T G+GLGL+IVREIA H A+V + Sbjct: 420 EREKVFEPFYRAGATQHVNPGGTGLGLSIVREIAAMHRASVTL 462 >gi|300312679|ref|YP_003776771.1| periplasmic sensor signal transduction histidine kinase [Herbaspirillum seropedicae SmR1] Length = 459 Score = 253 bits (646), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 165/479 (34%), Positives = 249/479 (51%), Gaps = 29/479 (6%) Query: 31 IQRSLFGEILDWMLAPLLLLWPMSIAITYLIAQSIANQPFDRALEDSVTVLAQQVSEVNG 90 + S+ ++L W++APLLL+ + +TY +A A FD+ L DS L QV Sbjct: 4 MHSSIRRDLLKWLIAPLLLVNLIGAGLTYWLAWLPAQHAFDQNLMDSTWGLYAQVRHRQE 63 Query: 91 KTVARLPVSARDLLRADDIDNIYFQITGPRGEFVEGDRDMPQPPLDE--DKTIGSVQFRN 148 +T A L A +LR++ D +F + G+ V GD+ PQ P + D+ I + Sbjct: 64 RTTAELTQQAEQILRSNHSDTTFFAVRNTEGQIVVGDKGFPQLPASDVFDRPINY----D 119 Query: 149 DILHGNDVRIAYTQVDLRRTSEQRAASSKEPRLATVQVGETLEKRAQLANEIIKGVILPQ 208 + G VRIA QV ++ + V V ET+ KR + I+ ++ Sbjct: 120 GEMRGEPVRIAAMQVRVKNG------------VIWVAVAETIRKRDRAHYTILLSFLVLD 167 Query: 209 FVILPVALALVWFALSRGLSPLSELQQRIRARRPDDLSPIDSGQVPEEISPLVRSLNDML 268 + ++ +V A+ RGL PL LQ+ + R L ID P E+ PL+ ++N+++ Sbjct: 168 GALTFASIFVVLVAVRRGLRPLKSLQRNLEQRDHGKLGAIDGRGAPVELQPLIVAMNELM 227 Query: 269 ARLSQTIALQKRFIADAAHQMKTPLAGMRMQSELAL-RQTDQADIHRSLEQLAKSSESAT 327 AR+++ Q+ F+AD AHQ++TPL G+++Q EL + DQ D RSL + S E Sbjct: 228 ARINKGEQAQQNFMADVAHQLRTPLTGLKLQLELLHDKHQDQPDTARSLAMMNSSVERMI 287 Query: 328 RLVNQLLSLARAENQTPATAPFEPIELSELARNVVQDWVPMSFTQRIDLGFEQPGHPIMI 387 R QLL+LAR+E + E + L +L VQ ++ + +RIDLGF+ P + Sbjct: 288 RQSRQLLALARSEPGLFESRKLEELSLDKLVEESVQHFIEEADKKRIDLGFDL--RPARL 345 Query: 388 SGNPIMLRELLSNLLDNALHYTPALGSVTVRARADEETGQAFLEVEDTGPGIAPTERGHV 447 G+ +L +L+ NL+DNA+ Y+P G+VTVR EE L VED+GPGIAP R + Sbjct: 346 RGDRFLLSDLIDNLIDNAVRYSPPHGTVTVRCL--EEQDATVLSVEDSGPGIAPEHRELI 403 Query: 448 FERFYRILGTHTAGSGLGLAIVREIAQQHEATVDISNNPRSTDPKAPGCLFRVTLRMTP 506 F+RFYR AGSGLGLAIVREIA H + + + G +F V + P Sbjct: 404 FDRFYRA-NDKVAGSGLGLAIVREIAHDHGGVISV-----DCKEQGQGTIFTVRFPLAP 456 >gi|300312689|ref|YP_003776781.1| transmembrane sensor kinase transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 459 Score = 219 bits (559), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 147/436 (33%), Positives = 230/436 (52%), Gaps = 15/436 (3%) Query: 46 PLLLLWPMSIAITYLIAQSIANQPFDRALEDSVTVLAQQVSEVNGKTVARLPVSARDLLR 105 P+ + +S + Y A S A DRAL S ++A QV +G V +P +A +L Sbjct: 16 PMAVYVGLSTSDAYDNAVSSATLVQDRALLASARMIAGQVGWNDGAPVVSVPPAALELFA 75 Query: 106 ADDIDNIYFQITGPRGEFVEGDRDMPQPPLDEDKTIGSVQFRNDILHGNDVRIAYTQVDL 165 + D +Y+Q+ + G D P P D + +G +R+ Sbjct: 76 SPAQDAVYYQVLMDDDTLLAGRPDFPAAP---DFAALYPVYSTTSFNGKPLRV------- 125 Query: 166 RRTSEQRAASSKEP-RLATVQVGETLEKRAQLANEIIKGVILPQFVILPVALALVWFALS 224 S RA + R+ V VG+T++ R ++ ++ + Q V+L +A++LV L+ Sbjct: 126 --VSYIRALFDEGTLRMVAVSVGQTMQGRQEMIDDQWHASLRRQIVLLLLAISLVVLGLT 183 Query: 225 RGLSPLSELQQRIRARRPDDLSPIDSGQVPEEISPLVRSLNDMLARLSQTIALQKRFIAD 284 L PL L+ + RRPD L+P+ +G + +E+ P+V ++N + RL+ + +QKRF+AD Sbjct: 184 MELRPLLALKDELATRRPDSLTPLRAGGLQQELRPIVEAINQYIFRLNAQVTVQKRFVAD 243 Query: 285 AAHQMKTPLAGMRMQSELALRQTDQADIHRSLEQLAKSSESATRLVNQLLSLARAENQTP 344 AAHQ++TPLA + Q + A + D A + + L L + S S T L N+LL L++AE Sbjct: 244 AAHQLRTPLAVIDSQIQFARQLDDPARVAQVLASLQEGSRSMTDLTNKLLLLSQAEASDS 303 Query: 345 ATAPFEPIELSELARNVVQDWVPMSFTQRIDLGFEQPGHPIMISGNPIMLRELLSNLLDN 404 + P P++L ++ V+++ ++ + IDLG E M++GN L +L NL+DN Sbjct: 304 SAFPRAPVDLLAVSAMVLEELSGLALKKGIDLGLETTLESAMVNGNEAQLMGMLMNLIDN 363 Query: 405 ALHYTPALGSVTVRARADEETGQAFLEVEDTGPGIAPTERGHVFERFYRILGTHTAGSGL 464 AL YTP G VTV +++ Q + V D GPGI R VFERFYR GSGL Sbjct: 364 ALRYTPEGGKVTV--GLEKKRSQMIITVSDNGPGIPAEVRERVFERFYRNAAPDQPGSGL 421 Query: 465 GLAIVREIAQQHEATV 480 GLAIVREI Q + ++ Sbjct: 422 GLAIVREIVQASQGSI 437 >gi|300314014|ref|YP_003778106.1| two component sensor histidine kinase [Herbaspirillum seropedicae SmR1] Length = 467 Score = 208 bits (530), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 146/457 (31%), Positives = 236/457 (51%), Gaps = 23/457 (5%) Query: 32 QRSLFGEILDWMLAPLLLLWPMSIAITYLIAQSIANQPFDRALEDSVTVLAQQVSEVNGK 91 +RS+ +L W+++P+ L + Y N +DR L SV + + NG+ Sbjct: 8 RRSVRAYLLAWIISPIALFIIIDSFSLYRNTLESVNTAYDRMLIASVHSIGDLLRIENGE 67 Query: 92 TVARLPVSARDLLRADDIDNIYFQITGPRGEFVEGDRDMPQPPLDEDKTI---GSVQFRN 148 A LP +A ++ AD + ++I G G+F +GD D+P DK Sbjct: 68 LKASLPYAALEIYEADYSSRMIYRINGLDGKFFDGDADLPSYKGKADKEAIYPALAHIYE 127 Query: 149 DILHGNDVRIAYTQVDLRRTSEQRAASSKEPR-LATVQVGETLEKRAQLANEIIKGVILP 207 D +G VR+A + + + +PR A VQV ET+E R+ LA +I ++ Sbjct: 128 DTYNGVPVRVA---------ALFQPVVTNDPRGAALVQVAETMENRSALARKIFWETLIR 178 Query: 208 QFVILPVALALVWFALSRGLSPLSELQQRIRARRPDDLSPIDSGQVPEEISPLVRSLNDM 267 Q +L V +++ + + R L P+ L++++ R DDLSP+ P E+ P + +LN + Sbjct: 179 QAALLVVIVSVTLYVVRRALQPVDALRRQLDERPADDLSPVAPPMAPRELQPFIDALNQL 238 Query: 268 LARLSQTIALQKRFIADAAHQMKTPLAGMRMQSELALRQTDQADIHRSLEQLAKSSESAT 327 +ARL + + Q+RF+A+A+HQ++TPLA ++ Q + LR A + ++++ + E AT Sbjct: 239 MARLRRLLDHQQRFVANASHQLRTPLAVLKTQLQSGLRGDAPAPV--IWQEMSGTVERAT 296 Query: 328 RLVNQLLSLARAENQTPATAPFEPIELSELARNVVQDWVPMSFTQRIDLGFEQPGHPIMI 387 L NQLLSLA+ E Q E +L LAR D P+ + DL FE I++ Sbjct: 297 TLANQLLSLAKVE-QIRGRGAQEVCDLGMLARETAVDLSPLIAEK--DLDFELEAEKILV 353 Query: 388 SGNPIMLRELLSNLLDNALHYTPALGSVTVRARADEETGQAFLEVEDTGPGIAPTERGHV 447 G+P M+ EL+SNLL NA+ +TPA G + +R A E+ + L + D+G GI +V Sbjct: 354 MGHPWMIGELISNLLHNAIRHTPAQGRLGIRITAREDVAE--LLIWDSGEGIDDQAMENV 411 Query: 448 FERFYRILGTHTAGSGLGLAIVREIAQQHEATVDISN 484 F+ F ++ GLGL I EI +AT+ + N Sbjct: 412 FKAFS---SNVSSAGGLGLTICGEIVDSMQATISLRN 445 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.318 0.134 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 1,541,343 Number of extensions: 63425 Number of successful extensions: 408 Number of sequences better than 1.0e-08: 37 Number of HSP's gapped: 327 Number of HSP's successfully gapped: 37 Length of query: 515 Length of database: 1,619,870 Length adjustment: 89 Effective length of query: 426 Effective length of database: 1,198,455 Effective search space: 510541830 Effective search space used: 510541830 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)