BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0145.p
         (91 letters)

Database: BlastDatabases/689/689 
           4735 sequences; 1,619,870 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|300309981|ref|YP_003774073.1| two component response regulato...   154   1e-39
gi|300312680|ref|YP_003776772.1| two component response regulato...    81   2e-17
gi|300311842|ref|YP_003775934.1| response regulator transcriptio...    67   3e-13
gi|300312688|ref|YP_003776780.1| response regulator consisting o...    66   4e-13
gi|300313680|ref|YP_003777772.1| two component response regulato...    63   4e-12

>gi|300309981|ref|YP_003774073.1| two component response regulator
           protein [Herbaspirillum seropedicae SmR1]
          Length = 237

 Score =  154 bits (389), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 75/77 (97%), Positives = 77/77 (100%)

Query: 1   MLDLSARELGLLEVLLQRTGRLVSKEQLVDHLCEWGEEVSNNAIEVYVHRLRKKIEVGGI 60
           ML+LSARELGLLEVLLQRTGRLVSKEQLVDHLCEWGEEVSNNAIEVYVHRLRKKIEVGG+
Sbjct: 147 MLELSARELGLLEVLLQRTGRLVSKEQLVDHLCEWGEEVSNNAIEVYVHRLRKKIEVGGV 206

Query: 61  RIATVRGLGYCLEKLPE 77
           RIATVRGLGYCLEKLPE
Sbjct: 207 RIATVRGLGYCLEKLPE 223


>gi|300312680|ref|YP_003776772.1| two component response regulator
           protein [Herbaspirillum seropedicae SmR1]
          Length = 220

 Score = 80.9 bits (198), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 37/73 (50%), Positives = 52/73 (71%)

Query: 2   LDLSARELGLLEVLLQRTGRLVSKEQLVDHLCEWGEEVSNNAIEVYVHRLRKKIEVGGIR 61
           ++LS RE  +LE L+Q   R+VSK+Q++D +  WGE+ + NA+EVYV R+R KI   G+ 
Sbjct: 145 IELSLREWTVLEYLMQHASRVVSKQQIIDAVLPWGEDFTINAVEVYVSRIRLKIADSGVA 204

Query: 62  IATVRGLGYCLEK 74
           I T+RG GY LEK
Sbjct: 205 IRTIRGFGYMLEK 217


>gi|300311842|ref|YP_003775934.1| response regulator transcription
           regulator protein [Herbaspirillum seropedicae SmR1]
          Length = 239

 Score = 66.6 bits (161), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 36/87 (41%), Positives = 53/87 (60%), Gaps = 2/87 (2%)

Query: 2   LDLSARELGLLEVLLQRTGRLVSKEQLVDHLCEWGEEVSNNAIEVYVHRLRKKIEVGGIR 61
           ++L+ RE+ LLE++  R GR+ +K++L+D L    +  S N++E YV RLRKK+      
Sbjct: 147 IELTRREVTLLEIIAARPGRIFNKDELMDRLFTVDDNPSANSVEQYVARLRKKLAAAAFE 206

Query: 62  IATVRGLGY--CLEKLPESIASAGVAS 86
           I T+RGLGY   L    E  A AG A+
Sbjct: 207 IRTLRGLGYQLVLHAPAEPGAGAGTAA 233


>gi|300312688|ref|YP_003776780.1| response regulator consisting of a
           CheY-like receiver domain and a winged-helix DNA-binding
           domain-containing protein [Herbaspirillum seropedicae
           SmR1]
          Length = 222

 Score = 66.2 bits (160), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 37/73 (50%), Positives = 48/73 (65%)

Query: 2   LDLSARELGLLEVLLQRTGRLVSKEQLVDHLCEWGEEVSNNAIEVYVHRLRKKIEVGGIR 61
           L L ARE  +LEVL+ R G+ VSK  L+  +    EE S +AIEVY+ RLRKK++  G  
Sbjct: 148 LALPAREHDVLEVLILRQGKTVSKTALMKGVFSLSEEPSADAIEVYISRLRKKLDRSGAA 207

Query: 62  IATVRGLGYCLEK 74
           I T+RGLGY L +
Sbjct: 208 IMTLRGLGYLLRQ 220


>gi|300313680|ref|YP_003777772.1| two component response regulator
           protein [Herbaspirillum seropedicae SmR1]
          Length = 218

 Score = 63.2 bits (152), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 31/71 (43%), Positives = 47/71 (66%), Gaps = 2/71 (2%)

Query: 2   LDLSARELGLLEVLLQRTGRLVSKEQLVDHLCEWGEEVSNNAIEVYVHRLRKKIEVGGIR 61
           ++LSARE  LL+  + R G ++S+ QL + L  W + + +NA+EV++H LRKK  VG   
Sbjct: 148 VNLSAREFTLLQAFMDRPGVVLSRAQLEEKLYGWDDSIESNAVEVHIHALRKK--VGSDF 205

Query: 62  IATVRGLGYCL 72
           I  VRG+GY +
Sbjct: 206 IKNVRGVGYLV 216


  Database: BlastDatabases/689/689
    Posted date:  Apr 10, 2011 12:15 AM
  Number of letters in database: 1,619,870
  Number of sequences in database:  4735
  
Lambda     K      H
   0.319    0.137    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 4735
Number of Hits to DB: 246,518
Number of extensions: 7779
Number of successful extensions: 46
Number of sequences better than 1.0e-08: 8
Number of HSP's gapped: 48
Number of HSP's successfully gapped: 8
Length of query: 91
Length of database: 1,619,870
Length adjustment: 61
Effective length of query: 30
Effective length of database: 1,331,035
Effective search space: 39931050
Effective search space used: 39931050
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 123 (52.0 bits)