BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0009.0144.p (131 letters) Database: BlastDatabases/689/689 4735 sequences; 1,619,870 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|300309981|ref|YP_003774073.1| two component response regulato... 224 2e-60 gi|300313818|ref|YP_003777910.1| two component transcription reg... 130 3e-32 gi|300313680|ref|YP_003777772.1| two component response regulato... 127 4e-31 gi|300312680|ref|YP_003776772.1| two component response regulato... 120 3e-29 gi|300309361|ref|YP_003773453.1| response regulator for cobalt/z... 112 8e-27 >gi|300309981|ref|YP_003774073.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 237 Score = 224 bits (571), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 115/117 (98%), Positives = 115/117 (98%) Query: 1 MRILLAEDDSVLADGLTRSLRHSGYAADCVKNGVEADSALSTQDFDLLILDLGLPKMSGL 60 MRILLAEDDSVLADGLTRSLRHSGYAADCVKNGVEADSALSTQDFDLLILDLGLPKMSGL Sbjct: 1 MRILLAEDDSVLADGLTRSLRHSGYAADCVKNGVEADSALSTQDFDLLILDLGLPKMSGL 60 Query: 61 EVLRRLRARNSRLPVLILTAADSVEQRVQGLDLGADDYMAKPFALSELEARVRARAR 117 EVLRRLRARNSRLPVLILTAADSVEQRVQGLDLGADDYMAKPFALSELEARVRA R Sbjct: 61 EVLRRLRARNSRLPVLILTAADSVEQRVQGLDLGADDYMAKPFALSELEARVRALTR 117 >gi|300313818|ref|YP_003777910.1| two component transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 224 Score = 130 bits (328), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 66/122 (54%), Positives = 88/122 (72%) Query: 1 MRILLAEDDSVLADGLTRSLRHSGYAADCVKNGVEADSALSTQDFDLLILDLGLPKMSGL 60 MRILL ED L+ L +++R + +C NG +ADS L TQD+ L+ILDL LP+M G+ Sbjct: 1 MRILLVEDHIELSRWLAKAMRDAHLTVECAHNGADADSLLLTQDYALVILDLTLPRMDGM 60 Query: 61 EVLRRLRARNSRLPVLILTAADSVEQRVQGLDLGADDYMAKPFALSELEARVRARARARR 120 EVL+R+RAR +R PVLILTA + RV GL++GADDY+AKPF L ELEARV+A R + Sbjct: 61 EVLKRMRARGNRTPVLILTARGGLADRVSGLNMGADDYLAKPFELEELEARVKALLRRSQ 120 Query: 121 SD 122 ++ Sbjct: 121 NN 122 >gi|300313680|ref|YP_003777772.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 218 Score = 127 bits (318), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 64/117 (54%), Positives = 84/117 (71%) Query: 1 MRILLAEDDSVLADGLTRSLRHSGYAADCVKNGVEADSALSTQDFDLLILDLGLPKMSGL 60 MR+LL EDD ++ + + + LR G+A D V++G AD AL T+D+ +L+LDLGLP+ GL Sbjct: 1 MRVLLVEDDPMVGEAVRKGLRQDGFAIDWVQDGKSADVALRTEDYAMLLLDLGLPQKDGL 60 Query: 61 EVLRRLRARNSRLPVLILTAADSVEQRVQGLDLGADDYMAKPFALSELEARVRARAR 117 VLR LR R + +PVLI TA D+V RV GLD GADDY+ KPF L EL AR+RA +R Sbjct: 61 AVLRTLRERGNAIPVLITTARDAVADRVAGLDAGADDYLIKPFDLEELSARMRALSR 117 >gi|300312680|ref|YP_003776772.1| two component response regulator protein [Herbaspirillum seropedicae SmR1] Length = 220 Score = 120 bits (302), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 66/131 (50%), Positives = 85/131 (64%), Gaps = 8/131 (6%) Query: 1 MRILLAEDDSVLADGLTRSLRHSGYAADCVKNGVEADSALSTQDFD--LLILDLGLPKMS 58 M +LL EDD VL DGL+R L G+ V NG +A S Q F+ +L+LD+GLP + Sbjct: 1 MNVLLVEDDPVLTDGLSRVLNSHGFTVHTVNNGNDALS----QRFNAAVLVLDIGLPGID 56 Query: 59 GLEVLRRLRARNSRLPVLILTAADSVEQRVQGLDLGADDYMAKPFALSELEARVRARARA 118 G EVLRR+RA + PVL+LTA D++ RV GL+LGADDY+ KPFA EL AR+ +A Sbjct: 57 GFEVLRRMRAAGNNTPVLLLTARDTIPDRVHGLELGADDYLVKPFATPELVARI--KALI 114 Query: 119 RRSDRHPARFA 129 RRS PA+ Sbjct: 115 RRSAPQPAQLT 125 >gi|300309361|ref|YP_003773453.1| response regulator for cobalt/zinc/cadmium resistance transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 235 Score = 112 bits (281), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 65/131 (49%), Positives = 80/131 (61%), Gaps = 6/131 (4%) Query: 1 MRILLAEDDSVLADGLTRSLRHSGYAADCVKNGVEADSALSTQDFDLLILDLGLPKMSGL 60 M ILL ED+ D L R L SG+ D V+ GV+ T D+ L+ILD+ LP M+G Sbjct: 1 MHILLVEDEPKSGDYLRRGLTESGFVVDWVQTGVDGLHNARTLDYKLIILDVMLPGMNGW 60 Query: 61 EVLRRLRARNSRLPVLILTAADSVEQRVQGLDLGADDYMAKPFALSELEARVRARARARR 120 ++LR LR R PVL LTA D VE RV+GL+LGADDY+ KPFA +EL ARVR R Sbjct: 61 DILRELR-RTHDTPVLFLTARDEVEDRVKGLELGADDYLVKPFAYTELLARVRTLLR--- 116 Query: 121 SDRHPARFAQL 131 R P+R L Sbjct: 117 --RGPSREVDL 125 Database: BlastDatabases/689/689 Posted date: Apr 10, 2011 12:15 AM Number of letters in database: 1,619,870 Number of sequences in database: 4735 Lambda K H 0.322 0.136 0.373 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 4735 Number of Hits to DB: 319,632 Number of extensions: 11322 Number of successful extensions: 177 Number of sequences better than 1.0e-08: 44 Number of HSP's gapped: 167 Number of HSP's successfully gapped: 44 Length of query: 131 Length of database: 1,619,870 Length adjustment: 75 Effective length of query: 56 Effective length of database: 1,264,745 Effective search space: 70825720 Effective search space used: 70825720 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 125 (52.8 bits)